Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011536.1 Corchorus capsularis cultivar CVL-1 contig11557, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53051

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
938--971
6
5.5
6
93
6
59
52
14
0
32
1.42
1911--1935
10
2.5
10
100
0
50
24
8
20
48
1.76
2507--2556
20
2.4
22
73
10
59
66
10
6
18
1.42
3471--3504
11
3.2
10
84
15
50
50
17
2
29
1.61
13929--14016
40
2.2
40
83
4
106
40
6
5
46
1.54
16122--16173
25
2.1
25
85
7
70
19
5
3
71
1.22
16827--16891
30
2.2
29
89
5
103
40
16
26
16
1.90
20403--20485
42
2.0
43
83
7
107
24
16
20
38
1.93
21326--21377
25
2.1
25
85
7
70
19
5
3
71
1.22
23442--23512
23
3.0
23
83
2
88
38
18
7
36
1.78
23442--23534
46
2.0
46
81
4
107
36
17
7
38
1.78
23143--23708
22
25.9
22
68
13
240
36
16
9
37
1.81
23691--23741
19
2.6
20
81
6
77
25
21
9
43
1.83
23847--23986
22
6.4
22
76
3
93
35
15
10
39
1.80
24057--24196
22
6.4
22
75
11
128
37
19
6
36
1.77
24239--24391
22
6.9
23
74
8
86
39
17
9
33
1.83
24287--24349
22
2.9
22
90
0
99
34
17
12
34
1.88
25487--25523
19
1.9
19
94
0
65
67
2
5
24
1.25
27556--27598
23
2.0
23
81
9
54
4
37
16
41
1.69
40224--40249
10
2.6
10
100
0
52
7
26
11
53
1.63
40691--40741
15
3.5
15
68
10
52
58
0
7
33
1.27

Tables:   1

The End!