Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011539.1 Corchorus capsularis cultivar CVL-1 contig11560, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2423
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27


Found at i:2292 original size:11 final size:11

Alignment explanation


    Indices: 2264--2292  Score: 51
    Period size: 11  Copynumber: 2.7  Consensus size: 11

       2254 CCTCACCTGT

                       
       2264 TTTA-TTTCTG
          1 TTTATTTTCTG

                       
       2274 TTTATTTTCTG
          1 TTTATTTTCTG

                    
       2285 TTTATTTT
          1 TTTATTTT

       2293 TAATGCTTTT


Statistics
Matches: 18,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  10    4  0.22
  11   14  0.78

ACGTcount: A:0.10, C:0.07, G:0.07, T:0.76


Consensus pattern (11 bp):   
TTTATTTTCTG
Done.