Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011545.1 Corchorus capsularis cultivar CVL-1 contig11566, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53433

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
902--931
11
2.7
11
100
0
60
10
6
6
76
1.15
1535--1921
36
9.9
36
76
18
355
38
9
16
35
1.81
1557--1895
44
8.2
44
76
17
361
38
9
16
35
1.80
1492--2060
80
7.1
80
87
5
790
38
9
16
35
1.81
1948--2008
32
1.9
32
93
0
104
39
9
14
36
1.80
3203--3281
31
2.7
29
84
9
99
34
10
26
29
1.89
4079--4141
2
35.5
2
71
23
52
46
1
0
52
1.10
4089--4148
19
2.9
20
81
15
70
45
1
0
53
1.10
4072--4147
28
2.7
29
80
15
86
47
1
0
51
1.09
5012--5055
12
3.7
12
76
11
54
38
25
34
2
1.68
5005--5052
24
2.0
24
95
0
87
39
22
33
4
1.74
5013--5070
24
2.4
24
85
0
62
36
24
34
5
1.78
8552--8593
10
4.5
10
77
17
54
0
11
30
57
1.35
10065--10166
31
3.3
31
83
2
116
17
22
26
33
1.96
18409--19375
170
5.8
168
89
2
1380
34
16
19
28
1.94
18409--19375
339
2.9
334
88
5
1384
34
16
19
28
1.94
20749--20831
8
10.0
8
97
2
139
12
12
0
75
1.04
21126--21166
20
2.0
22
85
9
59
19
2
7
70
1.22
21129--21172
22
2.2
20
88
12
63
20
0
9
70
1.14
21129--21178
13
4.5
11
80
16
59
20
0
10
70
1.16
21119--21191
34
2.2
33
85
7
94
19
2
8
69
1.26
21462--21516
13
3.9
14
78
19
60
41
12
5
40
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21461--21527
15
4.6
14
78
12
73
41
13
7
37
1.73
43951--44015
27
2.4
27
84
5
78
38
26
15
20
1.92
44749--44798
24
2.1
24
81
3
57
48
12
22
18
1.80
44759--44809
24
2.1
24
88
0
75
47
15
17
19
1.83
45552--45850
152
2.0
149
97
2
562
41
18
13
26
1.88
48986--49022
19
1.9
19
94
0
65
21
29
18
29
1.97
50777--50810
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!