genome.fa.s11546.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011546.1 Corchorus capsularis cultivar CVL-1 contig11567, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83050

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1217--1303	44	2.0	43	84	8	115	40	6	17	35	1.76
1652--1734	43	1.9	44	87	7	125	51	0	8	39	1.32
1835--1914	32	2.5	32	77	0	88	22	17	26	33	1.96
2484--2537	24	2.2	24	83	9	65	18	24	0	57	1.40
2955--3136	55	3.3	55	90	0	283	25	18	7	48	1.74
3989--4013	5	5.0	5	100	0	50	80	0	0	20	0.72
11070--11132	32	2.0	32	96	0	117	47	9	11	31	1.71
11534--12567	438	2.4	434	84	4	1260	42	16	13	27	1.85
12751--12800	13	4.0	12	82	12	57	40	0	2	58	1.10
12748--12792	18	2.4	18	92	3	72	37	0	2	60	1.09
12755--12796	21	1.9	23	90	9	70	38	0	2	59	1.10
17012--17036	10	2.5	10	100	0	50	48	20	8	24	1.76
17946--17979	13	2.6	13	95	0	59	23	8	8	58	1.56
17976--18006	6	5.2	6	100	0	62	32	0	16	51	1.44
20188--20214	12	2.2	12	100	0	54	22	18	33	25	1.97
20100--20329	127	1.8	127	100	0	460	18	26	24	30	1.98
21202--21350	34	4.5	34	82	8	189	34	15	16	34	1.90
21169--21320	65	2.3	66	93	2	252	32	17	15	34	1.91
23313--23356	21	2.1	21	87	8	63	18	34	9	38	1.82
23553--23660	33	3.3	33	93	0	180	19	33	32	14	1.92
23742--23829	33	2.7	33	89	3	124	12	31	38	17	1.87
25838--25900	3	20.7	3	96	3	117	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26415--26487	28	2.6	28	88	0	101	15	10	30	43	1.80
28221--28249	14	2.1	14	93	6	51	27	6	13	51	1.66
31552--31603	25	2.1	24	85	3	68	36	7	7	48	1.61
34316--34358	21	2.0	22	86	4	61	65	9	20	4	1.40
34700--35149	7	62.3	7	70	11	207	54	2	24	18	1.57
34683--35380	36	18.8	35	75	13	460	54	2	22	20	1.57
34972--35316	77	4.5	77	81	10	311	53	2	22	20	1.59
35180--35226	14	3.3	14	85	8	51	55	2	23	19	1.54
35257--35307	21	2.4	21	86	3	66	52	1	23	21	1.57
35275--35383	37	3.0	35	84	4	128	53	2	23	20	1.59
35377--35498	25	4.9	25	76	13	81	58	4	18	18	1.57
35418--35496	24	3.2	24	78	10	70	62	3	16	17	1.48
35473--35516	18	2.6	17	79	10	54	54	2	20	22	1.56
55654--55688	2	17.0	2	94	5	61	2	48	0	48	1.16
55657--55685	15	1.9	15	100	0	58	3	48	0	48	1.18
55655--55687	17	1.9	17	100	0	66	3	48	0	48	1.17
74495--74582	41	2.2	40	86	6	126	31	10	18	39	1.84
74637--74714	34	2.2	34	82	8	86	44	7	10	37	1.67
74781--74836	28	2.0	28	86	13	80	32	17	8	41	1.81
75656--75695	18	2.2	18	90	4	62	47	2	20	30	1.63

Tables:   1

The End!