Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011550.1 Corchorus capsularis cultivar CVL-1 contig11571, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54751

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
914--1001
21
4.0
21
80
7
79
43
4
6
45
1.51
3201--3243
21
2.0
21
90
0
68
41
6
11
39
1.68
4680--4734
21
2.6
20
82
8
56
43
7
5
43
1.55
4696--4755
21
2.7
21
84
7
75
41
8
8
41
1.65
3681--5231
513
3.1
502
82
6
1751
35
13
13
37
1.84
5843--5882
21
1.9
21
89
0
62
42
0
5
52
1.23
5979--6021
21
2.0
21
81
0
50
44
4
6
44
1.52
5951--7235
647
2.0
628
84
5
1650
36
14
13
35
1.85
7098--7140
21
2.0
21
81
0
50
46
4
4
44
1.45
7484--7535
27
1.9
27
96
0
95
61
19
0
19
1.35
9365--9390
2
13.0
2
100
0
52
50
0
0
50
1.00
12122--12196
37
2.0
37
92
0
123
42
16
6
34
1.74
14650--14675
5
5.2
5
100
0
52
42
19
0
38
1.51
15875--15911
18
2.0
18
89
5
56
8
18
0
72
1.08
16821--17075
137
1.9
137
99
0
501
31
11
20
36
1.88
21531--21598
27
2.6
27
83
2
84
17
14
22
45
1.85
23919--23965
9
5.6
9
85
14
73
57
0
0
42
0.98
23931--23987
18
3.0
20
82
7
55
50
0
0
49
1.00
24078--24242
58
2.8
58
95
0
303
24
18
18
38
1.93
31548--31663
7
17.1
7
66
16
50
56
0
0
43
1.05
31549--31663
21
5.3
21
78
14
110
55
0
0
43
1.05
31585--31657
28
2.5
31
77
18
86
50
0
0
49
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31574--31658
9
9.0
9
75
23
61
54
0
0
45
1.00
32031--32084
17
3.4
17
71
23
62
14
7
22
55
1.64
32028--32090
31
2.0
31
100
0
126
15
6
22
55
1.63
39834--39860
2
13.5
2
100
0
54
51
0
0
48
1.00
43930--43963
2
17.5
2
93
6
61
50
0
0
50
1.00
44169--44233
31
2.1
31
100
0
130
20
15
23
41
1.89
48367--49373
438
2.3
438
84
3
1260
30
13
13
42
1.81
49787--50955
441
2.7
439
89
2
1690
27
12
17
43
1.85
51146--51198
27
2.0
27
88
0
79
32
5
22
39
1.78
51490--51517
14
2.0
14
100
0
56
14
0
7
78
0.95
52538--52567
11
2.6
11
94
5
51
86
0
13
0
0.57
52611--52635
10
2.5
10
100
0
50
80
0
12
8
0.92
53009--53042
17
2.0
17
100
0
68
41
29
11
17
1.85

Tables:   1

The End!