genome.fa.s11551.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011551.1 Corchorus capsularis cultivar CVL-1 contig11572, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55148

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1146--1257	56	2.0	56	94	0	197	25	12	29	32	1.93
1617--1657	19	2.2	19	95	0	73	56	0	34	9	1.32
4886--4910	12	2.1	12	100	0	50	20	8	16	56	1.65
6132--6183	24	2.2	24	100	0	104	40	15	7	36	1.76
6156--6225	34	2.1	34	100	0	140	32	17	5	44	1.72
8252--8285	11	3.1	11	87	12	52	41	0	17	41	1.50
10990--11020	16	1.9	16	93	0	53	19	6	19	54	1.65
12781--12812	11	2.8	12	86	13	50	40	0	18	40	1.51
15313--15387	29	2.5	31	91	4	118	33	16	12	38	1.85
17023--17096	29	2.5	31	84	4	89	45	12	14	27	1.80
17023--17104	31	2.8	29	86	3	101	41	12	14	31	1.83
17461--18446	434	2.2	436	81	6	1161	41	12	14	30	1.83
18694--18912	73	3.0	73	97	0	413	29	10	12	47	1.75
20775--20842	33	2.1	33	100	0	136	45	5	5	42	1.52
22531--22844	156	2.0	156	95	0	565	27	15	19	37	1.92
24689--24754	24	2.7	23	84	9	78	13	34	27	24	1.93
24998--25034	17	2.2	17	95	0	65	40	10	18	29	1.85
25044--25078	2	18.0	2	94	5	63	51	0	0	48	1.00
25255--25298	6	7.3	6	81	0	52	18	52	13	15	1.75
25258--25298	18	2.3	18	91	0	64	17	53	14	14	1.73
27228--27344	27	4.3	27	88	0	180	19	17	41	21	1.90
28101--28166	21	3.3	21	72	20	77	51	19	22	6	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28997--29031	11	3.0	11	91	8	52	57	0	42	0	0.99
29092--29135	11	3.7	11	85	14	61	56	2	40	0	1.11
29093--29129	13	3.0	13	92	7	60	59	0	40	0	0.97
29746--29841	32	3.0	32	75	1	93	17	21	25	35	1.95
43100--43159	26	2.3	26	80	8	68	65	6	5	23	1.37
49675--49766	43	2.0	46	83	8	118	34	17	4	43	1.69
52228--52347	51	2.4	51	84	8	147	42	6	11	39	1.68
52953--53259	47	6.8	47	80	9	306	20	20	18	40	1.92
53072--53259	95	2.0	94	85	9	258	20	19	18	41	1.91
54733--54776	21	2.1	21	83	8	54	18	31	9	40	1.81
54944--55102	32	4.9	33	81	3	162	12	36	36	14	1.84
54944--55052	34	3.3	34	87	3	125	12	34	34	17	1.88

Tables:   1

The End!