genome.fa.s11552.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011552.1 Corchorus capsularis cultivar CVL-1 contig11573, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88373

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194--227	2	17.5	2	93	6	61	47	0	0	52	1.00
842--876	3	11.7	3	93	0	61	0	0	28	71	0.86
790--1018	86	2.7	86	96	1	415	32	7	19	39	1.81
1091--1125	13	2.5	14	86	13	54	42	5	0	51	1.25
4868--4950	22	3.8	21	72	17	62	22	43	22	10	1.84
4877--4962	45	1.9	44	88	2	127	22	45	22	10	1.82
7217--7289	33	2.2	33	80	9	87	9	28	41	20	1.84
7259--7312	23	2.3	23	87	0	81	11	33	37	18	1.86
12630--12664	5	7.0	5	87	12	54	20	0	0	80	0.72
12738--12771	17	2.0	17	94	0	59	23	5	14	55	1.61
13756--13840	33	2.6	33	80	0	98	11	29	36	22	1.90
18684--19218	35	15.7	34	80	11	557	30	19	11	38	1.87
18684--19218	70	7.8	69	82	10	613	30	19	11	38	1.87
18714--19225	137	3.7	138	85	7	615	30	19	11	38	1.87
19026--19218	64	2.9	64	87	6	255	31	20	10	36	1.87
36550--36597	24	2.0	25	83	4	62	18	6	6	68	1.32
38997--39031	12	2.9	12	100	0	70	17	31	34	17	1.93
39018--39082	30	2.2	30	88	5	96	21	38	30	9	1.85
39627--39660	10	3.0	12	83	16	54	26	41	26	5	1.78
46514--46578	30	2.2	30	86	5	87	23	38	29	9	1.85
47629--47670	21	2.0	21	86	9	59	23	9	23	42	1.83
55226--55255	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55714--55765	23	2.3	23	83	3	61	42	15	7	34	1.75
58646--58763	58	2.0	58	98	0	227	24	12	10	52	1.70
59616--59652	18	2.1	18	89	0	56	21	51	13	13	1.75
60880--61053	73	2.4	73	90	0	260	31	19	18	31	1.96
61343--61379	18	2.1	18	100	0	74	56	0	5	37	1.22
63757--64135	192	2.0	192	99	0	749	26	9	19	44	1.81
69787--69949	31	5.5	31	77	12	155	17	23	25	32	1.97
71338--71529	85	2.5	72	74	20	206	25	16	17	41	1.89
71537--71582	21	2.2	21	100	0	92	17	23	8	50	1.74
74632--74667	18	2.0	18	94	0	63	55	19	0	25	1.43
81828--81902	26	2.9	26	80	4	80	24	18	21	36	1.95
85529--85579	23	2.3	23	86	3	68	86	1	9	1	0.73
87869--87899	2	15.5	2	100	0	62	48	0	0	51	1.00

Tables:   1

The End!