Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011555.1 Corchorus capsularis cultivar CVL-1 contig11576, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18771
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:669 original size:116 final size:117
Alignment explanation
Indices: 460--684 Score: 323
Period size: 116 Copynumber: 1.9 Consensus size: 117
450 AAAAAAAAAT
* * *
460 AAATGAATGTTGATAAGTATTGAAAAAAACCGCTAATAATAGAAAAAAAATTTCCATAATACTTT
1 AAATGAATCTTGATAAGTATTGAAAAAAACCGCTAATAACAGAAAAAAAATTTCCACAATACTTT
* *
525 TCGGCCTAAAAAAATTCCCCAATACTTATGACTATCATGGCCTATGTTTTTG
66 TCGGCCTAAAAAAAATCCACAATACTTATGACTATCATGGCCTATGTTTTTG
* *
577 AAATGAATCTTGATAAGTCTTG-AAAAAA-CGTTAATAACA-AAAAAAAACTTTTCCACAATACT
1 AAATGAATCTTGATAAGTATTGAAAAAAACCGCTAATAACAGAAAAAAAA--TTTCCACAATACT
*
639 TTTCGGCC-AAAAGAAAATCCACAATGCTTATGACTATCATGGCCTA
64 TTTCGGCCTAAAA-AAAATCCACAATACTTATGACTATCATGGCCTA
685 GGGATTAATT
Statistics
Matches: 97, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
114 8 0.08
115 13 0.13
116 56 0.58
117 20 0.21
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (117 bp):
AAATGAATCTTGATAAGTATTGAAAAAAACCGCTAATAACAGAAAAAAAATTTCCACAATACTTT
TCGGCCTAAAAAAAATCCACAATACTTATGACTATCATGGCCTATGTTTTTG
Found at i:842 original size:17 final size:18
Alignment explanation
Indices: 807--844 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
797 TGGGTGATTT
807 AGAATTACGTTGAAAAAA
1 AGAATTACGTTGAAAAAA
825 AGAATTACGTTGAAAAAA
1 AGAATTACGTTGAAAAAA
843 AG
1 AG
845 TTAACAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.05, G:0.18, T:0.21
Consensus pattern (18 bp):
AGAATTACGTTGAAAAAA
Found at i:974 original size:2 final size:2
Alignment explanation
Indices: 951--998 Score: 64
Period size: 2 Copynumber: 25.0 Consensus size: 2
941 TTAATATGTA
* *
951 AT AT A- AT AT AT AC AT CT A- AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
991 AT AT AT AT
1 AT AT AT AT
999 TAAATTAGAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
1 2 0.05
2 38 0.95
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (2 bp):
AT
Found at i:2643 original size:203 final size:203
Alignment explanation
Indices: 2294--3039 Score: 1354
Period size: 203 Copynumber: 3.7 Consensus size: 203
2284 AAAAATTAAT
2294 ACTATCATGGCTTAGGGATGAATTGTTACACTAATTTGTATGTATTTTGTGTATTTGGTCTCTGT
1 ACTATCATGGCTTAGGGATGAATTGTTACACTAATTTGTATGTATTTTGTGTATTTGGTCTCTGT
2359 TACTTTCAAGTTTTGATTTAATACTTTCACATGAGACAAATTAATTAGAATTAGATTTTTTTTAC
66 TACTTTCAAGTTTTGATTTAATACTTTCACATGAGACAAATTAATTAGAATTAGATTTTTTTTAC
2424 CGAATAGAAACAAAAAAAAATTTATACTTTTCCACAATACTTTTCGGCCAAAAAAAAATCCACAA
131 CGAATAGAAACAAAAAAAAATTTATACTTTTCCACAATACTTTTCGGCCAAAAAAAAATCCACAA
2489 TCCTTATG
196 TCCTTATG
2497 ACTATCATGGCTTAGGGATGAATTGTTACACTAATTTGTATGTATTTTGTGTATTTGGTCTCTGT
1 ACTATCATGGCTTAGGGATGAATTGTTACACTAATTTGTATGTATTTTGTGTATTTGGTCTCTGT
2562 TACTTTCAAGTTTTGATTTAATACTTTCACATGAGACAAATTAATTAGAATTAGATTTTTTTTAC
66 TACTTTCAAGTTTTGATTTAATACTTTCACATGAGACAAATTAATTAGAATTAGATTTTTTTTAC
2627 CGAATAGAAACAAAAAAAAA-TTATACTTTTCCACAATACTTTTCGGCCAAAAAAAAATCCACAA
131 CGAATAGAAACAAAAAAAAATTTATACTTTTCCACAATACTTTTCGGCCAAAAAAAAATCCACAA
2691 TCCTTATG
196 TCCTTATG
* *
2699 ACTATCATGGCTTAGGGATGAATTGTTACACTAATTTGTATGTATTTTGTGTATTTGGTCACTAT
1 ACTATCATGGCTTAGGGATGAATTGTTACACTAATTTGTATGTATTTTGTGTATTTGGTCTCTGT
*
2764 TACTTTCAAGTTTTGATTTAATACTTTCACA-GAGACAAATTAATTAGAATTAGATATTTTTTAC
66 TACTTTCAAGTTTTGATTTAATACTTTCACATGAGACAAATTAATTAGAATTAGATTTTTTTTAC
*
2828 C-ATATAGAAACGAAAAAAAAATTAATACTTTTCCACAATACTTTTCGGCCAAAAAAAAAATCCA
131 CGA-ATAGAAAC-AAAAAAAAATTTATACTTTTCCACAATACTTTTCGGCC-AAAAAAAAATCCA
2892 CAATCCTTATG
193 CAATCCTTATG
* * *
2903 ACTATCATGGCTTAGGGATGAATTGTTATAGTAATTTGTATGTATTTTGTGTATTTGGTCTATGT
1 ACTATCATGGCTTAGGGATGAATTGTTACACTAATTTGTATGTATTTTGTGTATTTGGTCTCTGT
* *
2968 TACTTTCAAGTTCTGATATTAATACTTTCACATGAGACAAATTAATTAGAATTAGATTTTCTTTA
66 TACTTTCAAGTTTTGAT-TTAATACTTTCACATGAGACAAATTAATTAGAATTAGATTTTTTTTA
3033 CCGAATA
130 CCGAATA
3040 TATATATATT
Statistics
Matches: 524, Mismatches: 12, Indels: 11
0.96 0.02 0.02
Matches are distributed among these distances:
200 1 0.00
201 41 0.08
202 155 0.30
203 177 0.34
204 100 0.19
205 14 0.03
206 35 0.07
207 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.39
Consensus pattern (203 bp):
ACTATCATGGCTTAGGGATGAATTGTTACACTAATTTGTATGTATTTTGTGTATTTGGTCTCTGT
TACTTTCAAGTTTTGATTTAATACTTTCACATGAGACAAATTAATTAGAATTAGATTTTTTTTAC
CGAATAGAAACAAAAAAAAATTTATACTTTTCCACAATACTTTTCGGCCAAAAAAAAATCCACAA
TCCTTATG
Found at i:3629 original size:13 final size:13
Alignment explanation
Indices: 3608--3644 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
3598 GATAATTCTT
3608 TTTGACCCTCCAA
1 TTTGACCCTCCAA
*
3621 TTTGTCCCTCCAA
1 TTTGACCCTCCAA
*
3634 CTTGACCCTCC
1 TTTGACCCTCC
3645 TAATAATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.16, C:0.43, G:0.08, T:0.32
Consensus pattern (13 bp):
TTTGACCCTCCAA
Found at i:3821 original size:13 final size:13
Alignment explanation
Indices: 3803--3833 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
3793 GATGACACGT
3803 GAGGGACAAATTG
1 GAGGGACAAATTG
*
3816 GAGGGACAAGTTG
1 GAGGGACAAATTG
3829 GAGGG
1 GAGGG
3834 TCATGTAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.32, C:0.06, G:0.48, T:0.13
Consensus pattern (13 bp):
GAGGGACAAATTG
Found at i:10068 original size:14 final size:14
Alignment explanation
Indices: 10049--10082 Score: 54
Period size: 12 Copynumber: 2.6 Consensus size: 14
10039 AAATCCTCTC
10049 CCCCATTTTTTTTT
1 CCCCATTTTTTTTT
10063 CCCCA--TTTTTTT
1 CCCCATTTTTTTTT
10075 CCCCATTT
1 CCCCATTT
10083 GTTCTCGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
12 12 0.67
14 6 0.33
ACGTcount: A:0.09, C:0.35, G:0.00, T:0.56
Consensus pattern (14 bp):
CCCCATTTTTTTTT
Found at i:10374 original size:25 final size:25
Alignment explanation
Indices: 10329--10376 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
10319 TTTTAAACTC
*
10329 ATTATTTATTATTTAAAATATATTT
1 ATTATTTATTATGTAAAATATATTT
*
10354 ATTATTTATT-TAGTAATATATAT
1 ATTATTTATTAT-GTAAAATATAT
10377 ATATATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 19 0.95
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATTATTTATTATGTAAAATATATTT
Found at i:10498 original size:31 final size:31
Alignment explanation
Indices: 10433--10493 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
10423 AACTTTATGT
* **
10433 TTTCCGATTGTACCCTTATTTTTAAAACATA
1 TTTCCAATTGTACCCTTATTTAAAAAACATA
10464 TTTCCAATTGTACCCTT-TTTAAAAAA-ATA
1 TTTCCAATTGTACCCTTATTTAAAAAACATA
10493 T
1 T
10494 ATTTCTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 4 0.15
30 7 0.26
31 16 0.59
ACGTcount: A:0.33, C:0.18, G:0.05, T:0.44
Consensus pattern (31 bp):
TTTCCAATTGTACCCTTATTTAAAAAACATA
Found at i:10687 original size:38 final size:37
Alignment explanation
Indices: 10622--10699 Score: 113
Period size: 38 Copynumber: 2.1 Consensus size: 37
10612 AATTTGACTT
10622 TTTGTTTCCAACGTCCGATTTAATTTTGCCTTTTGTC
1 TTTGTTTCCAACGTCCGATTTAATTTTGCCTTTTGTC
* *
10659 TTTGTTTCCAATCGT-TGTATTTAATTTTGCTTTTTGTC
1 TTTGTTTCCAA-CGTCCG-ATTTAATTTTGCCTTTTGTC
10697 TTT
1 TTT
10700 ATCTTCAATG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
37 12 0.32
38 25 0.68
ACGTcount: A:0.13, C:0.17, G:0.13, T:0.58
Consensus pattern (37 bp):
TTTGTTTCCAACGTCCGATTTAATTTTGCCTTTTGTC
Found at i:11594 original size:22 final size:22
Alignment explanation
Indices: 11569--11868 Score: 129
Period size: 22 Copynumber: 13.5 Consensus size: 22
11559 ATCAAAGAGA
* *
11569 TTATCAAAATGTCATAGCGAGG
1 TTATCAAAATTTCATAGTGAGG
*
11591 TTAT-AAGAATTTCATAGTGTGG
1 TTATCAA-AATTTCATAGTGAGG
*
11613 TTAACAAAATTTCATTAG-GAGG
1 TTATCAAAATTTCA-TAGTGAGG
* * *
11635 TTA-CTAATATTTCATGGGGAGG
1 TTATC-AAAATTTCATAGTGAGG
* * *
11657 TTATCAAAATTTTATAATGTGG
1 TTATCAAAATTTCATAGTGAGG
*
11679 TTATCAAAATTTCATA-TGAATG
1 TTATCAAAATTTCATAGTG-AGG
* *
11701 TTAT-AAAAGTCTCAATTTCA-TAAGG
1 TTATCAAAA-TTTC-A--T-AGTGAGG
* * * *
11726 AGTACCAAAATTTGATAG-AAGG
1 -TTATCAAAATTTCATAGTGAGG
*
11748 TTATC-AAATCTCATA-T-AGTG
1 TTATCAAAATTTCATAGTGAG-G
* * *
11768 ATTATCGAAATTTCATAGAGATCAGA
1 -TTATCAAAATTTCAT--AG-TGAGG
* *
11794 TCATCAAAATTT-ATAG-GAAGA
1 TTATCAAAATTTCATAGTG-AGG
* **
11815 ATATCAAAATTTCATAGTGCTG
1 TTATCAAAATTTCATAGTGAGG
*
11837 TTATCAAAATTTCAAAGTGAGG
1 TTATCAAAATTTCATAGTGAGG
11859 TTATCAAAAT
1 TTATCAAAAT
11869 ATGATTATCA
Statistics
Matches: 210, Mismatches: 41, Indels: 54
0.69 0.13 0.18
Matches are distributed among these distances:
19 2 0.01
20 9 0.04
21 32 0.15
22 128 0.61
23 9 0.04
24 3 0.01
25 14 0.07
26 7 0.03
27 6 0.03
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (22 bp):
TTATCAAAATTTCATAGTGAGG
Found at i:11902 original size:22 final size:20
Alignment explanation
Indices: 11877--11931 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 20
11867 ATATGATTAT
*
11877 CAAAATTTCATAGAGGGGTCAA
1 CAAAATTTCATAGAGAGG--AA
* * *
11899 CAAAATTTTATAAAGAGGAT
1 CAAAATTTCATAGAGAGGAA
11919 CAAAATTTCATAG
1 CAAAATTTCATAG
11932 TATGGTTACC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 12 0.44
22 15 0.56
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.27
Consensus pattern (20 bp):
CAAAATTTCATAGAGAGGAA
Found at i:12113 original size:22 final size:22
Alignment explanation
Indices: 11978--12426 Score: 200
Period size: 22 Copynumber: 20.6 Consensus size: 22
11968 TTATGGAGTA
* *
11978 ATCAAAATTTC--AGGGAGGAT
1 ATCAAAATTTCATAGTGAGGTT
*
11998 ATCAAAATTTCATAGTTTA-GTT
1 ATCAAAATTTCATAG-TGAGGTT
* * *
12020 TTCAAATTTTCATA-AGAGGGTT
1 ATCAAAATTTCATAGTGA-GGTT
* * * *
12042 ATCCAAATCTCATAGT-ATGTAG
1 ATCAAAATTTCATAGTGAGGT-T
* **
12064 ATCAAAATTTCATAGGGAGAAT
1 ATCAAAATTTCATAGTGAGGTT
* *
12086 AACAAAATTTCATAATGAGGTT
1 ATCAAAATTTCATAGTGAGGTT
** *
12108 ATCAAAAAATCATAGGGAGGTT
1 ATCAAAATTTCATAGTGAGGTT
12130 ATCAAAA-TT--T-GT-A-GTT
1 ATCAAAATTTCATAGTGAGGTT
* * *
12146 ATCAAGATTTCATAAG-AAAGTT
1 ATCAAAATTTCAT-AGTGAGGTT
* *
12168 ATCAAAATTTTATAGGGAGGTTT
1 ATCAAAATTTCATAGTGAGG-TT
*
12191 ATCAAAACTTT-ATAG-GAAGATTT
1 ATCAAAA-TTTCATAGTG-AG-GTT
*
12214 ATCAAAATTTCATAGCGAGGTT
1 ATCAAAATTTCATAGTGAGGTT
* * *
12236 ATCACAATTTCATAGTGTGATT
1 ATCAAAATTTCATAGTGAGGTT
* * *
12258 ATCAAAATTTCAGAGTGCGATT
1 ATCAAAATTTCATAGTGAGGTT
12280 A-CTAACAA-TTCATA-TGGAGGTT
1 ATC-AA-AATTTCATAGT-GAGGTT
* * * ** *
12302 TTTAAATTTTCATAACGTGGTT
1 ATCAAAATTTCATAGTGAGGTT
* *
12324 ATCAATATATCATA-TGGAGGTT
1 ATCAAAATTTCATAGT-GAGGTT
* * *
12346 ATCAACATCTCATAGTGTTGGTT
1 ATCAAAATTTCATAGTG-AGGTT
*
12369 ATCAAAATTTCATATTGAGGTCT
1 ATCAAAATTTCATAGTGAGGT-T
* * *
12392 -TCAAAATTCCTTAG-GAAGATT
1 ATCAAAATTTCATAGTG-AGGTT
*
12413 AACAAAATTTCATA
1 ATCAAAATTTCATA
12427 AGAAGGTTAA
Statistics
Matches: 319, Mismatches: 76, Indels: 66
0.69 0.16 0.14
Matches are distributed among these distances:
16 9 0.03
17 3 0.01
18 1 0.00
19 2 0.01
20 12 0.04
21 12 0.04
22 222 0.70
23 54 0.17
24 4 0.01
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (22 bp):
ATCAAAATTTCATAGTGAGGTT
Found at i:12136 original size:44 final size:44
Alignment explanation
Indices: 11978--12435 Score: 237
Period size: 44 Copynumber: 10.5 Consensus size: 44
11968 TTATGGAGTA
* *
11978 ATCAAAATTTC--AGGGAGGATATCAAAATTTCATAGTTTA-GTT
1 ATCAAAATTTCATAGGGAGGTTATCAAAATTTCATAG-TGAGGTT
* * * * * * *
12020 TTCAAATTTTCATA-AGAGGGTTATCCAAATCTCATAGT-ATGTAG
1 ATCAAAATTTCATAGGGA-GGTTATCAAAATTTCATAGTGAGGT-T
** * *
12064 ATCAAAATTTCATAGGGAGAATAACAAAATTTCATAATGAGGTT
1 ATCAAAATTTCATAGGGAGGTTATCAAAATTTCATAGTGAGGTT
**
12108 ATCAAAAAATCATAGGGAGGTTATCAAAA-TT--T-GT-A-GTT
1 ATCAAAATTTCATAGGGAGGTTATCAAAATTTCATAGTGAGGTT
* * * * * *
12146 ATCAAGATTTCATAAGAAAGTTATCAAAATTTTATAGGGAGGTTT
1 ATCAAAATTTCATAGGGAGGTTATCAAAATTTCATAGTGAGG-TT
* * *
12191 ATCAAAACTTT-ATAGGAAGATTTATCAAAATTTCATAGCGAGGTT
1 ATCAAAA-TTTCATAGGGAG-GTTATCAAAATTTCATAGTGAGGTT
* * * * * * *
12236 ATCACAATTTCATAGTGTGATTATCAAAATTTCAGAGTGCGATT
1 ATCAAAATTTCATAGGGAGGTTATCAAAATTTCATAGTGAGGTT
* * * * ** *
12280 A-CTAACAA-TTCATATGGAGGTTTTTAAATTTTCATAACGTGGTT
1 ATC-AA-AATTTCATAGGGAGGTTATCAAAATTTCATAGTGAGGTT
* * * * * *
12324 ATCAATATATCATATGGAGGTTATCAACATCTCATAGTGTTGGTT
1 ATCAAAATTTCATAGGGAGGTTATCAAAATTTCATAGTG-AGGTT
** * * *
12369 ATCAAAATTTCATATTGAGGTCT-TCAAAATTCCTTAG-GAAGATT
1 ATCAAAATTTCATAGGGAGGT-TATCAAAATTTCATAGTG-AGGTT
* * *
12413 AACAAAATTTCATAAGAAGGTTA
1 ATCAAAATTTCATAGGGAGGTTA
12436 AAAAAAATTA
Statistics
Matches: 310, Mismatches: 82, Indels: 46
0.71 0.19 0.11
Matches are distributed among these distances:
38 26 0.08
39 3 0.01
40 1 0.00
41 2 0.01
42 11 0.04
43 11 0.04
44 164 0.53
45 68 0.22
46 24 0.08
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (44 bp):
ATCAAAATTTCATAGGGAGGTTATCAAAATTTCATAGTGAGGTT
Found at i:12449 original size:22 final size:22
Alignment explanation
Indices: 12406--12456 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
12396 AATTCCTTAG
* * * *
12406 GAAGATTAACAAAATTTCATAA
1 GAAGGTTAAAAAAAATTAATAA
12428 GAAGGTTAAAAAAAATTAATAA
1 GAAGGTTAAAAAAAATTAATAA
*
12450 AAAGGTT
1 GAAGGTT
12457 CTCGAAATTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.57, C:0.04, G:0.14, T:0.25
Consensus pattern (22 bp):
GAAGGTTAAAAAAAATTAATAA
Found at i:12621 original size:2 final size:2
Alignment explanation
Indices: 12614--12644 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
12604 CTAAAACTAG
12614 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12645 TTTACAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:13054 original size:29 final size:28
Alignment explanation
Indices: 13004--13062 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
12994 AGGCTAGCAA
* *
13004 TTCCTCCATGATTCCTTTTCCTTTGTGG
1 TTCCTCCATAATTCCTTCTCCTTTGTGG
13032 TTCCTCCATTAATTCCTTCTCCTTTGTGG
1 TTCCTCCA-TAATTCCTTCTCCTTTGTGG
13061 TT
1 TT
13063 TCGTTGTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
28 8 0.29
29 20 0.71
ACGTcount: A:0.08, C:0.29, G:0.12, T:0.51
Consensus pattern (28 bp):
TTCCTCCATAATTCCTTCTCCTTTGTGG
Done.