Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011559.1 Corchorus capsularis cultivar CVL-1 contig11580, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39883

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--45
2
19.5
2
100
0
78
51
0
0
48
1.00
1329--1353
2
12.5
2
100
0
50
0
0
48
52
1.00
2343--2506
54
3.0
54
100
0
328
25
7
25
42
1.80
2914--2961
24
2.0
24
95
0
87
43
16
14
25
1.86
6163--6380
110
2.0
110
97
0
409
35
16
21
26
1.94
11396--11422
13
2.1
13
100
0
54
51
25
0
22
1.48
11433--11459
12
2.2
12
100
0
54
44
11
11
33
1.75
12425--12480
16
3.5
16
73
9
60
53
0
3
42
1.18
14410--14448
19
2.1
19
90
0
60
74
2
17
5
1.12
16732--16759
13
2.2
13
100
0
56
57
21
7
14
1.61
24876--24905
2
15.0
2
100
0
60
50
0
0
50
1.00
27447--27471
2
12.5
2
100
0
50
52
0
0
48
1.00
29784--29823
21
1.9
21
84
0
53
70
2
27
0
1.01
30296--30331
19
1.9
19
88
5
56
36
0
5
58
1.22
35089--35121
2
16.5
2
100
0
66
51
0
0
48
1.00
39646--39699
28
1.9
28
84
0
72
37
25
12
24
1.91

Tables:   1

The End!