Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011563.1 Corchorus capsularis cultivar CVL-1 contig11584, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44442

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
765--850
32
2.6
33
87
5
122
30
27
33
8
1.86
865--916
22
2.3
23
83
3
70
34
1
7
55
1.39
1313--1337
2
12.5
2
100
0
50
52
0
0
48
1.00
2831--2889
16
3.4
16
70
17
55
20
15
15
49
1.80
2845--2905
20
3.2
20
68
17
67
21
13
13
52
1.73
2831--2905
36
2.1
36
100
0
150
21
14
13
50
1.77
6820--6964
32
4.5
32
85
3
159
39
33
9
17
1.83
6842--6929
15
5.5
16
70
17
58
40
32
9
17
1.80
6840--6963
64
1.9
64
86
3
178
38
33
9
18
1.83
7285--7317
16
2.1
16
94
0
57
24
27
21
27
1.99
8320--8364
15
2.9
15
80
6
54
51
13
0
35
1.41
8547--8588
19
2.2
19
83
8
50
33
2
0
64
1.07
10636--10671
6
6.5
6
81
18
51
33
16
0
50
1.46
10632--10658
10
2.7
10
100
0
54
29
18
0
51
1.46
10636--10671
16
2.2
17
95
5
65
33
16
0
50
1.46
13176--13281
32
3.4
31
83
6
124
16
9
36
36
1.82
13423--13461
20
2.0
20
85
10
53
35
5
2
56
1.35
13481--13553
16
4.6
16
76
6
67
9
13
28
47
1.74
18643--18708
31
2.1
31
94
0
114
27
19
4
48
1.68
19036--19096
22
2.8
22
92
2
97
36
14
14
34
1.87
18992--19142
22
6.8
22
73
10
65
34
11
17
37
1.85
19272--19576
22
13.8
22
66
19
75
41
9
14
35
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19385--19433
25
1.9
26
87
4
73
48
4
10
36
1.56
19410--19600
22
8.8
22
69
16
98
42
9
12
35
1.75
19437--19601
86
1.9
86
82
6
208
41
10
13
33
1.79
19739--20192
22
20.7
22
69
14
172
37
9
14
37
1.79
19910--20013
23
4.6
23
80
3
104
37
7
14
40
1.75
21592--21635
21
2.0
22
86
4
63
38
31
6
22
1.81
25968--26011
16
2.8
16
89
0
70
6
11
40
40
1.68
27937--27976
3
13.0
3
94
5
71
67
0
0
32
0.91
28069--28166
31
3.1
31
82
10
119
34
24
6
34
1.80
35768--35816
21
2.3
21
86
6
64
63
4
8
24
1.40
41828--41870
22
1.9
23
90
4
70
2
30
0
67
1.03
41933--41970
20
2.0
20
89
5
60
34
18
5
42
1.73
42085--42130
23
2.0
24
86
4
67
19
2
6
71
1.18

Tables:   1

The End!