Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011567.1 Corchorus capsularis cultivar CVL-1 contig11588, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71232

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1920--1948
2
15.0
2
92
7
51
51
0
0
48
1.00
2892--3617
199
3.7
198
87
4
1041
34
17
13
33
1.89
5704--5856
72
2.1
72
100
0
306
26
32
16
24
1.96
9177--9229
16
3.2
16
84
5
70
5
41
1
50
1.36
12978--13053
6
12.5
6
84
1
80
44
3
47
3
1.40
12978--13047
18
3.9
18
86
0
95
44
2
48
4
1.37
24310--24363
3
18.0
3
100
0
108
33
0
0
66
0.92
25457--25515
25
2.4
25
80
5
66
42
3
11
42
1.58
25584--26045
154
3.0
154
94
2
797
40
16
9
34
1.80
35536--35564
3
9.7
3
100
0
58
68
0
31
0
0.89
41367--41412
3
15.3
3
100
0
92
67
0
0
32
0.91
41838--41871
2
17.0
2
100
0
68
50
0
0
50
1.00
44386--44438
27
2.0
28
88
7
83
43
7
20
28
1.79
49767--49798
2
16.0
2
100
0
64
50
0
0
50
1.00
54169--54203
13
2.8
13
95
4
63
5
5
88
0
0.63
55064--55088
3
8.3
3
100
0
50
32
0
0
68
0.90
56179--56212
2
17.5
2
87
6
52
47
2
0
50
1.16

Tables:   1

The End!