Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011568.1 Corchorus capsularis cultivar CVL-1 contig11589, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64468

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3827--3924
49
2.0
49
95
0
178
29
12
26
31
1.92
5189--5228
19
2.1
19
95
0
71
62
10
5
22
1.46
11208--11380
87
2.0
85
92
2
283
25
34
23
16
1.96
14538--14579
20
2.2
20
86
4
59
54
2
2
40
1.26
14596--14636
20
2.0
20
100
0
82
41
14
14
29
1.86
16154--16213
28
2.1
28
87
6
84
31
5
8
55
1.51
25325--25364
20
2.0
20
90
5
62
67
10
0
22
1.20
25326--25370
20
2.2
20
84
4
54
71
6
2
20
1.20
29926--30076
74
2.1
74
91
3
243
41
9
28
20
1.83
32216--32245
12
2.5
12
100
0
60
33
30
0
36
1.58
32868--32953
45
1.9
45
83
4
111
38
16
11
33
1.85
32825--33288
22
20.9
22
67
16
142
36
16
9
37
1.82
33027--33084
23
2.5
23
94
0
98
41
13
5
39
1.67
33342--33591
22
11.5
22
71
11
142
33
14
9
42
1.78
33766--33904
22
6.3
22
77
6
147
38
17
9
34
1.82
33766--33902
44
3.1
44
86
4
170
38
16
9
35
1.81
33766--33905
66
2.1
67
81
7
162
39
17
9
34
1.81
34429--34494
31
2.1
31
83
5
80
48
3
18
30
1.63
34611--34790
98
1.9
98
85
2
256
36
6
6
50
1.54
34753--35834
546
2.0
541
91
2
1767
33
12
16
38
1.86
38013--38077
30
2.1
31
91
2
105
27
21
4
46
1.71
38019--38085
30
2.2
31
89
5
100
31
17
4
46
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38147--38211
30
2.1
31
91
2
105
29
18
4
47
1.68
40803--40863
29
2.0
31
84
6
81
32
18
3
45
1.65
40803--40863
31
2.0
31
84
6
81
32
18
3
45
1.65
44343--44384
22
1.9
22
85
0
57
42
21
16
19
1.89
44954--45017
2
32.0
2
75
6
58
48
0
10
40
1.38
49016--49060
2
22.0
2
95
4
81
48
2
0
48
1.13
51519--51590
22
3.4
21
77
11
67
51
9
15
23
1.73
51605--51707
22
4.8
21
77
7
91
39
9
11
38
1.75
53516--53596
40
2.0
40
100
0
162
41
7
19
30
1.79
54755--54814
28
2.1
28
81
6
68
36
5
21
36
1.76
55195--55239
22
2.0
22
87
8
65
66
0
8
24
1.20
55118--55302
93
2.0
93
86
2
255
55
0
10
33
1.38
61518--61692
79
2.2
79
89
3
264
28
16
26
28
1.97
64400--64463
2
31.5
2
90
3
101
46
3
1
48
1.27

Tables:   1

The End!