Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011569.1 Corchorus capsularis cultivar CVL-1 contig11590, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43741

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1839--1891
22
2.4
22
90
0
79
7
37
41
13
1.72
11418--11497
40
2.0
40
95
0
142
33
15
15
36
1.88
11542--11625
26
3.2
26
72
9
89
41
8
19
30
1.80
11546--11650
53
2.0
53
98
0
201
40
9
18
32
1.82
11552--11637
26
3.3
26
73
9
93
37
10
19
32
1.86
12622--12654
16
2.0
17
88
5
50
27
39
6
27
1.80
13103--13358
107
2.4
107
90
1
381
41
8
10
40
1.69
13895--13923
15
1.9
15
100
0
58
86
0
6
6
0.72
14804--14832
1
29.0
1
100
0
58
100
0
0
0
0.00
20201--20250
25
2.0
25
96
0
91
14
14
20
52
1.75
24202--24319
58
2.1
56
90
3
182
32
16
16
33
1.92
30013--30376
187
2.0
183
87
6
529
37
17
15
28
1.91
30792--30857
22
3.0
22
72
12
73
7
15
9
68
1.39
33113--33453
167
2.0
168
93
2
587
26
7
30
35
1.84
36104--36174
31
2.3
31
95
0
124
29
12
19
38
1.89
39063--39099
19
1.9
19
88
0
56
51
29
10
8
1.65
39383--39457
29
2.8
26
88
8
98
28
25
14
32
1.95
40146--40226
29
2.7
29
79
7
83
38
12
22
27
1.90
42237--42305
12
5.8
12
79
5
68
36
26
24
13
1.92

Tables:   1

The End!