Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001157.1 Corchorus capsularis cultivar CVL-1 contig01157, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28


Found at i:1004 original size:14 final size:15

Alignment explanation


    Indices: 974--1008  Score: 54
    Period size: 14  Copynumber: 2.4  Consensus size: 15

        964 ACAATTCTAG

                           
        974 AACATTTATTATTAT
          1 AACATTTATTATTAT

                      *    
        989 AACATTTA-TGTTAT
          1 AACATTTATTATTAT

                  
       1003 AACATT
          1 AACATT

       1009 GAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  14   11  0.58
  15    8  0.42

ACGTcount: A:0.40, C:0.09, G:0.03, T:0.49


Consensus pattern (15 bp):   
AACATTTATTATTAT
Done.