Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011570.1 Corchorus capsularis cultivar CVL-1 contig11591, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37447

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
889--921
9
3.8
9
88
8
50
12
0
24
63
1.28
1174--1216
9
4.4
9
78
16
50
44
6
4
44
1.52
1180--1223
21
2.1
21
100
0
88
45
4
9
40
1.56
2014--2050
12
3.1
12
100
0
74
51
32
16
0
1.45
3076--3104
11
2.6
11
100
0
58
44
0
17
37
1.49
4311--4455
69
2.1
69
85
3
195
50
0
13
35
1.42
13388--13490
33
3.1
33
92
2
163
21
31
27
20
1.98
13611--14082
33
14.3
33
84
3
288
18
18
29
33
1.95
13611--14083
66
7.2
66
81
3
375
18
18
29
33
1.95
13611--14122
99
5.2
99
79
1
454
18
18
28
33
1.95
14250--14386
33
4.2
32
87
3
148
20
17
32
29
1.95
14250--14386
66
2.1
66
88
2
168
20
17
32
29
1.95
14250--14431
99
1.8
99
81
6
226
20
17
32
29
1.96
14278--14431
33
4.7
32
84
4
182
20
16
33
29
1.95
22648--22680
16
2.0
17
88
5
50
33
18
6
42
1.75
24641--24692
21
2.5
22
79
14
67
61
13
7
17
1.54
27958--28101
65
2.2
65
89
0
225
44
13
16
25
1.84
29546--29700
82
1.9
83
97
1
294
18
15
20
45
1.85
33209--33245
1
37.0
1
100
0
74
100
0
0
0
0.00

Tables:   1

The End!