Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011572.1 Corchorus capsularis cultivar CVL-1 contig11593, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53979

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
665--704
16
2.5
15
88
8
53
37
5
7
50
1.53
822--856
17
1.9
18
88
11
54
42
8
0
48
1.33
1063--1119
26
2.2
25
87
9
80
43
15
5
35
1.70
2506--2564
30
2.0
30
89
0
91
44
13
3
38
1.61
2589--2623
2
17.0
2
94
5
61
48
0
2
48
1.16
6351--6795
168
2.7
165
82
2
530
41
14
13
30
1.85
6867--6899
2
16.5
2
100
0
66
48
0
0
51
1.00
10640--10741
54
1.9
53
86
6
143
49
23
7
19
1.74
16560--17107
155
3.5
153
81
6
647
33
14
19
32
1.92
17423--17483
26
2.3
27
88
5
88
31
18
27
22
1.97
27021--27445
160
2.7
158
85
3
570
40
19
14
26
1.89
28823--28857
2
17.5
2
100
0
70
0
0
51
48
1.00
31479--31515
2
18.5
2
94
0
65
45
0
0
54
1.00
32248--32289
19
2.2
19
95
0
75
42
16
4
35
1.69
32451--32713
107
2.5
105
85
2
341
41
8
7
41
1.64
49503--49598
29
3.2
28
72
16
86
31
15
16
36
1.90
49465--49629
60
2.8
60
82
9
194
30
18
15
35
1.92
51926--51955
1
30.0
1
93
0
51
0
3
0
96
0.21
53216--53290
37
2.0
37
100
0
150
48
12
8
32
1.69

Tables:   1

The End!