Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011574.1 Corchorus capsularis cultivar CVL-1 contig11595, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13323
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35


Found at i:8765 original size:4 final size:4

Alignment explanation


    Indices: 8756--8786  Score: 62
    Period size: 4  Copynumber: 7.8  Consensus size: 4

       8746 ATCTCGCAAA

                                                  
       8756 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
          1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA

       8787 ATGATGATAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   27  1.00

ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23


Consensus pattern (4 bp):   
AAAT

Found at i:9823 original size:12 final size:13

Alignment explanation


    Indices: 9795--9829  Score: 54
    Period size: 12  Copynumber: 2.7  Consensus size: 13

       9785 ACATAAATTC

                          
       9795 AATGTTATAACATA
          1 AATGTTAT-ACATA

                         
       9809 AATGTTATA-ATA
          1 AATGTTATACATA

                     
       9821 AATGTTATA
          1 AATGTTATA

       9830 GAATTGTAAC


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  12   12  0.57
  13    1  0.05
  14    8  0.38

ACGTcount: A:0.49, C:0.03, G:0.09, T:0.40


Consensus pattern (13 bp):   
AATGTTATACATA
Done.