Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011578.1 Corchorus capsularis cultivar CVL-1 contig11599, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10672

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1079--1154
29
2.6
30
83
10
104
18
25
15
40
1.90
2091--2126
2
19.0
2
88
11
58
50
0
0
50
1.00
5187--5232
17
2.7
18
83
10
69
30
52
13
4
1.59
5426--5469
21
2.1
21
91
0
70
20
43
6
29
1.78
5540--5597
24
2.5
24
88
2
82
37
22
0
39
1.54
5607--5674
26
2.6
26
95
0
118
52
11
0
35
1.38
5607--5674
15
5.1
14
70
26
58
52
11
0
35
1.38
5820--5859
11
3.8
10
87
9
53
22
0
5
72
1.04
5821--5848
11
2.5
11
100
0
56
14
0
7
78
0.95
5820--5859
21
1.9
21
89
0
62
22
0
5
72
1.04
5998--6041
21
2.1
21
87
4
63
34
9
38
18
1.82
6078--6125
21
2.3
21
89
7
71
29
10
4
56
1.52
6582--6646
16
4.1
16
73
9
62
33
35
20
10
1.87
6565--6635
32
2.2
33
80
7
92
33
33
21
11
1.89
7375--7405
2
15.5
2
100
0
62
48
0
0
51
1.00
8075--8344
130
2.1
130
95
0
486
31
19
15
32
1.93
9171--9212
21
2.0
21
90
9
68
42
9
0
47
1.36
9332--9396
23
2.9
22
75
4
67
36
12
12
38
1.80
9463--9524
23
2.8
22
75
4
52
41
12
11
33
1.79
9553--9612
22
2.7
22
79
5
68
36
13
13
36
1.84
9596--9630
18
1.9
18
94
0
61
40
8
14
37
1.76
9613--9698
23
3.8
23
78
7
86
38
13
5
41
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9577--9905
22
15.6
21
70
15
137
35
14
9
40
1.79
9855--9905
19
2.6
20
90
6
86
25
17
11
45
1.83
9969--10043
22
3.4
22
83
0
96
33
16
9
41
1.80
10052--10218
22
7.3
22
76
11
122
38
17
8
34
1.82
10079--10220
68
2.1
66
81
5
160
39
19
8
32
1.82
10086--10217
46
2.9
45
80
8
119
38
18
9
34
1.82
10546--10621
36
2.1
36
82
4
91
60
7
17
14
1.57

Tables:   1

The End!