Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011580.1 Corchorus capsularis cultivar CVL-1 contig11601, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18475

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
876--914
21
1.9
20
84
5
51
46
0
5
48
1.24
9008--9062
29
1.9
29
85
3
76
47
20
12
20
1.82
17234--17557
22
15.0
22
69
12
120
35
15
9
39
1.80
17285--17369
23
3.7
23
85
1
109
38
12
7
41
1.71
17246--17369
45
2.8
45
82
10
139
38
13
8
38
1.76
17244--17538
44
6.8
44
75
9
158
35
13
9
40
1.78
17664--17715
22
2.4
22
90
3
88
36
11
7
44
1.70
17662--17970
22
13.6
22
66
16
87
34
16
9
39
1.81
17845--17970
44
2.9
44
73
9
103
37
18
7
36
1.80
18001--18093
22
4.1
22
75
9
80
37
19
9
33
1.84
18196--18233
19
2.0
20
85
15
53
63
2
5
28
1.30

Tables:   1

The End!