Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011581.1 Corchorus capsularis cultivar CVL-1 contig11602, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56806

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
918--988
35
2.1
35
86
2
90
39
8
16
35
1.79
1149--1209
2
32.0
2
84
15
85
49
1
0
49
1.10
1152--1209
29
2.0
29
96
0
107
48
1
0
50
1.11
1281--1338
18
3.1
18
80
7
62
56
6
0
36
1.26
2975--3032
30
1.9
30
92
0
98
18
17
34
29
1.94
2951--3010
24
2.5
24
91
0
93
18
16
33
31
1.93
2992--3072
41
2.0
41
92
0
135
17
18
37
27
1.93
3319--3351
8
4.2
8
84
7
50
15
36
3
45
1.61
3323--3357
15
2.3
15
95
0
61
11
34
8
45
1.71
3386--3445
31
1.9
31
100
0
120
23
33
20
23
1.97
3539--3579
20
2.0
20
95
0
73
36
29
0
34
1.58
3572--3624
25
2.1
25
96
0
97
26
28
3
41
1.73
6398--6453
27
2.1
27
96
0
103
50
8
7
33
1.61
26481--26512
2
17.0
2
87
12
50
53
0
0
46
1.00
26481--26512
13
2.5
13
100
0
64
53
0
0
46
1.00
32149--32214
29
2.3
29
94
0
114
31
22
16
28
1.96
34210--34251
2
21.0
2
95
0
75
47
0
2
50
1.14
34658--34682
13
1.9
13
100
0
50
48
0
4
48
1.20
38806--38847
23
1.9
21
90
9
66
64
21
0
14
1.29
40445--40478
2
17.0
2
100
0
68
50
0
0
50
1.00
43219--43243
1
25.0
1
100
0
50
0
0
0
100
0.00
47707--47948
123
2.0
122
89
2
369
32
8
16
42
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48546--48747
104
1.9
104
95
0
368
29
19
16
34
1.94
49631--49694
10
7.1
9
78
10
53
57
12
0
29
1.35
49631--49679
8
6.0
8
83
7
55
61
12
0
26
1.31
49631--49680
16
2.9
18
85
11
77
60
12
0
28
1.32
51959--52007
25
2.0
25
84
8
64
18
22
28
30
1.97
54325--54358
4
8.5
4
93
0
59
0
26
0
73
0.83
54353--54388
3
12.0
3
100
0
72
0
33
0
66
0.92
55894--55934
21
1.9
21
90
5
64
17
9
12
60
1.57
55767--56806
466
2.2
465
98
0
1999
25
13
18
42
1.87

Tables:   1

The End!