Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011585.1 Corchorus capsularis cultivar CVL-1 contig11606, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6816
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35


Found at i:3878 original size:14 final size:14

Alignment explanation


    Indices: 3844--3887  Score: 54
    Period size: 14  Copynumber: 3.1  Consensus size: 14

       3834 TACTTAATAA

                           
       3844 TTAGTTAATTTTCTT
          1 TTAGTT-ATTTTCTT

             *         *  
       3859 TAAGTTATTTTGTT
          1 TTAGTTATTTTCTT

                          
       3873 TTAGTTA-TTTCTT
          1 TTAGTTATTTTCTT

              
       3886 TT
          1 TT

       3888 TGCACAACTC


Statistics
Matches: 25,  Mismatches: 4, Indels: 2
        0.81            0.13        0.06

Matches are distributed among these distances:
  13    7  0.28
  14   13  0.52
  15    5  0.20

ACGTcount: A:0.18, C:0.05, G:0.09, T:0.68


Consensus pattern (14 bp):   
TTAGTTATTTTCTT

Found at i:6783 original size:2 final size:2

Alignment explanation


    Indices: 6776--6816  Score: 82
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       6766 CCACTGTATC

                                                                         
       6776 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   39  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Done.