Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011587.1 Corchorus capsularis cultivar CVL-1 contig11608, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35517

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3350--3422
17
4.5
16
73
10
67
16
13
34
35
1.88
3350--3471
32
3.8
31
77
6
100
18
14
32
34
1.91
3378--3427
16
3.1
16
80
11
57
22
10
30
38
1.86
3671--3710
16
2.5
17
84
8
57
5
12
30
52
1.60
4007--4039
2
17.0
2
87
6
50
45
0
3
51
1.16
4006--4036
15
2.1
15
93
0
53
41
0
3
54
1.16
6072--6116
15
2.9
16
83
6
65
13
8
13
64
1.49
18110--18272
60
2.7
60
87
2
213
37
15
17
29
1.91
18175--18275
29
3.4
30
67
14
82
39
15
19
24
1.91
24825--25503
49
13.9
49
85
2
742
24
32
13
30
1.93
29406--29457
15
3.6
14
80
10
52
46
7
13
32
1.72
29406--29444
15
2.6
15
84
8
53
43
7
15
33
1.75
30043--30216
94
1.8
96
90
4
282
36
11
21
30
1.89
31329--31584
77
3.4
73
78
10
243
30
19
19
30
1.97
31320--31584
38
7.0
38
76
8
247
31
19
18
30
1.96
31329--31582
74
3.4
75
79
13
231
30
19
19
30
1.96
31322--31581
113
2.3
113
91
2
416
30
19
18
31
1.96
31619--31699
34
2.4
34
85
4
101
32
25
3
38
1.74
31679--31762
15
5.3
15
87
8
114
30
19
2
47
1.62
31682--31762
16
5.1
16
85
10
112
29
18
2
49
1.61
31759--31905
47
3.1
47
89
1
213
22
28
16
32
1.95
34267--34433
82
2.0
82
89
8
253
38
4
26
30
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34443--34500
25
2.2
27
87
6
84
46
5
31
17
1.70

Tables:   1

The End!