Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011588.1 Corchorus capsularis cultivar CVL-1 contig11609, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78645

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--421
147
2.8
146
81
6
461
23
32
13
30
1.93
4--428
49
8.7
48
83
2
361
23
32
14
30
1.94
8368--8431
34
1.9
34
83
3
85
32
9
12
45
1.74
16663--16717
28
1.9
28
85
3
74
76
5
1
16
1.06
16695--16719
13
1.9
13
100
0
50
76
0
0
24
0.80
16981--17168
84
2.3
80
87
5
263
41
20
9
29
1.83
17152--17257
54
2.0
53
92
3
178
36
27
4
31
1.77
18640--18664
12
2.1
12
100
0
50
72
0
0
28
0.86
19982--20498
133
3.9
133
86
4
713
37
14
16
31
1.89
26094--26126
16
2.0
17
88
5
50
45
0
3
51
1.16
33306--33338
11
2.7
13
81
18
52
12
9
24
54
1.66
42206--42293
44
2.0
44
100
0
176
34
13
22
29
1.93
49643--49675
14
2.4
14
100
0
66
12
0
0
87
0.53
51246--51371
16
7.9
16
77
5
121
11
19
34
34
1.87
51244--51390
32
4.6
32
82
5
156
10
21
33
35
1.87
51619--51700
42
2.0
42
92
0
137
36
6
19
37
1.77
52223--52304
9
10.0
9
73
21
65
9
19
36
34
1.85
52249--52326
16
4.9
16
80
14
90
7
19
39
33
1.80
52247--52330
32
2.6
32
92
0
141
8
20
38
33
1.82
52224--52272
25
2.0
25
91
0
80
10
20
36
32
1.86
52373--52413
16
2.5
17
84
11
50
2
17
51
29
1.58
63332--63370
14
2.7
14
88
4
51
43
7
12
35
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65153--65397
34
7.1
35
82
8
150
17
19
22
40
1.92
65177--65583
35
11.7
35
84
1
491
17
19
21
41
1.91
65567--65815
54
4.6
54
88
5
351
25
16
23
34
1.95
65567--65886
109
3.0
108
83
7
364
26
16
22
34
1.95
65570--65871
54
5.6
55
85
5
332
27
16
22
33
1.95
65643--65916
54
5.0
54
85
5
177
28
15
21
33
1.94
65769--65939
54
3.1
54
82
5
141
29
16
21
32
1.95
66796--66824
10
2.7
11
89
10
51
0
13
0
86
0.58
70857--71087
86
2.9
75
84
10
257
34
15
6
44
1.71
70788--71087
162
1.8
162
91
3
496
35
16
6
42
1.72
70939--71100
86
1.9
87
90
3
265
33
13
6
46
1.68
70947--71120
86
2.0
86
85
1
213
33
13
6
47
1.68
72347--72544
35
5.7
35
87
2
263
34
18
19
27
1.95
72311--72602
70
4.2
70
82
5
279
34
18
18
29
1.94
72311--73435
105
10.8
105
81
7
415
33
20
16
29
1.95
72515--73492
35
28.1
35
85
6
1254
32
21
15
29
1.95
72516--73486
106
9.3
105
85
6
1235
32
21
15
29
1.95
72763--72812
24
2.1
24
96
0
91
36
26
16
22
1.94
74863--74919
5
11.2
5
83
9
71
3
19
0
77
0.92
74863--74919
16
3.7
16
90
4
82
3
19
0
77
0.92
74868--74919
21
2.5
21
87
6
70
3
19
0
76
0.93
74889--74928
21
1.9
21
85
10
55
7
20
0
72
1.08

Tables:   1

The End!