Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011589.1 Corchorus capsularis cultivar CVL-1 contig11610, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51097

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6475--6504
15
2.0
15
93
0
51
20
10
26
43
1.83
13215--13244
15
2.0
15
93
0
51
20
10
26
43
1.83
20575--20829
103
2.5
102
89
3
390
40
9
9
41
1.68
21565--21679
32
3.6
32
81
9
137
11
23
34
30
1.90
21555--21679
16
7.9
16
73
18
82
12
24
34
29
1.91
22754--22788
8
4.5
8
96
3
63
28
14
20
37
1.91
24681--24725
21
2.1
21
100
0
90
46
8
11
33
1.70
25880--25973
2
50.0
2
78
12
65
43
1
0
55
1.06
25887--25968
31
2.7
30
83
11
114
41
1
0
57
1.06
25883--25968
33
2.8
31
81
15
115
41
1
0
56
1.06
25891--25962
27
2.6
28
91
4
119
40
1
0
58
1.07
26754--26790
3
12.3
3
100
0
74
32
0
0
67
0.91
29414--29854
222
2.0
222
94
0
774
29
13
23
34
1.93
31264--31321
29
2.0
30
93
3
100
39
15
5
39
1.70
31519--31578
29
2.1
29
87
6
86
45
18
3
33
1.66
32523--32618
17
5.7
17
86
2
124
22
12
32
32
1.92
32522--32618
35
2.9
33
87
4
124
22
13
31
31
1.93
33798--33862
21
3.1
21
90
0
94
18
36
9
35
1.83
33934--33991
25
2.4
23
85
5
80
32
22
0
44
1.53
34001--34068
26
2.6
26
92
0
109
52
10
2
33
1.50
34001--34068
15
5.1
15
68
26
53
52
10
2
33
1.50
34719--34771
3
17.7
3
96
0
97
64
0
1
33
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35104--35144
21
2.0
21
85
0
55
31
12
36
19
1.89
41300--41328
12
2.3
13
94
5
51
44
0
0
55
0.99
48446--48502
29
2.0
29
85
0
78
40
3
15
40
1.65
48459--48517
30
2.0
29
86
3
82
37
3
15
44
1.63
48943--49036
45
2.2
43
88
7
138
38
21
5
35
1.76
51061--51097
2
18.5
2
100
0
74
48
0
0
51
1.00

Tables:   1

The End!