Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011591.1 Corchorus capsularis cultivar CVL-1 contig11612, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87162
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Found at i:7512 original size:21 final size:21
Alignment explanation
Indices: 7458--7503 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
7448 TGAAAAAAAA
*
7458 AAAGGAAAAATAATGGTCTGC
1 AAAGAAAAAATAATGGTCTGC
7479 AAAGAAAAAATAATGGTCTGC
1 AAAGAAAAAATAATGGTCTGC
7500 AAAG
1 AAAG
7504 TTATCATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.52, C:0.09, G:0.22, T:0.17
Consensus pattern (21 bp):
AAAGAAAAAATAATGGTCTGC
Found at i:7650 original size:92 final size:92
Alignment explanation
Indices: 7493--7712 Score: 422
Period size: 92 Copynumber: 2.4 Consensus size: 92
7483 AAAAAATAAT
* *
7493 GGTCTGCAAAGTTATCATAAAGAATCTCTGCAGATATTGTCTCCAATAATGCAAAGCTGACTCAT
1 GGTCTGCAAAGTTATCATGAAGAATCTCTGCAGAAATTGTCTCCAATAATGCAAAGCTGACTCAT
7558 TGGATGAAGAGAAAGCCAAATTATGAA
66 TGGATGAAGAGAAAGCCAAATTATGAA
7585 GGTCTGCAAAGTTATCATGAAGAATCTCTGCAGAAATTGTCTCCAATAATGCAAAGCTGACTCAT
1 GGTCTGCAAAGTTATCATGAAGAATCTCTGCAGAAATTGTCTCCAATAATGCAAAGCTGACTCAT
7650 TGGATGAAGAGAAAGCCAAATTATGAA
66 TGGATGAAGAGAAAGCCAAATTATGAA
7677 GGTCTGCAAAGTTATCATGAAGAATCTCTGCAGAAA
1 GGTCTGCAAAGTTATCATGAAGAATCTCTGCAGAAA
7713 GTAGAATTAT
Statistics
Matches: 126, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 126 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.25
Consensus pattern (92 bp):
GGTCTGCAAAGTTATCATGAAGAATCTCTGCAGAAATTGTCTCCAATAATGCAAAGCTGACTCAT
TGGATGAAGAGAAAGCCAAATTATGAA
Found at i:7984 original size:2 final size:2
Alignment explanation
Indices: 7977--8001 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7967 GTCTGGTATC
7977 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8002 AACAACAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:16340 original size:16 final size:16
Alignment explanation
Indices: 16319--16349 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
16309 AGATATTAGG
*
16319 GTTGATTTAACTTATT
1 GTTGATTTAAATTATT
16335 GTTGATTTAAATTAT
1 GTTGATTTAAATTAT
16350 AGTTCATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.03, G:0.13, T:0.55
Consensus pattern (16 bp):
GTTGATTTAAATTATT
Found at i:20660 original size:21 final size:21
Alignment explanation
Indices: 20623--20662 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
20613 ATGTGTTGTT
*
20623 TTTTCATGATATATATGTTGC
1 TTTTCATGATAAATATGTTGC
20644 TTTTC-TGATAAATTATGTT
1 TTTTCATGATAAA-TATGTT
20663 TGTGCTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.25, C:0.07, G:0.12, T:0.55
Consensus pattern (21 bp):
TTTTCATGATAAATATGTTGC
Found at i:24268 original size:2 final size:2
Alignment explanation
Indices: 24256--24338 Score: 59
Period size: 2 Copynumber: 43.5 Consensus size: 2
24246 GTTTAAGTAA
* * * *
24256 AT AT TT AT AT AT AT -T AT AT AC AA AT A- ACT AT AT AT GT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT
* * *
24296 AT AT AT AT AA AT AA AT AA AT AT AT A- AT AT AT AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24336 AT A
1 AT A
24339 AACATACCGA
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
1 5 0.08
2 56 0.90
3 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (2 bp):
AT
Found at i:24302 original size:34 final size:34
Alignment explanation
Indices: 24256--24340 Score: 95
Period size: 34 Copynumber: 2.5 Consensus size: 34
24246 GTTTAAGTAA
* *
24256 ATAT-TTATATATAT-TATATACAAATA-ACTATAT
1 ATATATTATATATATAAATAAACAAATATA-TA-AT
* *
24289 ATGTATTATATATATAAATAAATAAATATATAAT
1 ATATATTATATATATAAATAAACAAATATATAAT
24323 ATATATTATATATATAAA
1 ATATATTATATATATAAA
24341 CATACCGAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
33 3 0.07
34 29 0.66
35 11 0.25
36 1 0.02
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (34 bp):
ATATATTATATATATAAATAAACAAATATATAAT
Found at i:24308 original size:27 final size:27
Alignment explanation
Indices: 24261--24328 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
24251 AGTAAATATT
* *
24261 TATAT-ATATTATATACAAATAACTATA
1 TATATAATA-TATATACAAATAAATAAA
* * *
24288 TATGTATTATATATATAAATAAATAAA
1 TATATAATATATATACAAATAAATAAA
24315 TATATAATATATAT
1 TATATAATATATAT
24329 TATATATATA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
27 31 0.94
28 2 0.06
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (27 bp):
TATATAATATATATACAAATAAATAAA
Found at i:27328 original size:20 final size:19
Alignment explanation
Indices: 27303--27340 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
27293 GGGGGTTTGA
27303 GAAATATACTGATACCAATT
1 GAAATAT-CTGATACCAATT
*
27323 GAAATATTTGATACCAAT
1 GAAATATCTGATACCAAT
27341 CGTTGAAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.45, C:0.13, G:0.11, T:0.32
Consensus pattern (19 bp):
GAAATATCTGATACCAATT
Found at i:33233 original size:21 final size:21
Alignment explanation
Indices: 33209--33248 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
33199 GTTGAACTTC
33209 TTCATTTCTGAATCTGTCTTT
1 TTCATTTCTGAATCTGTCTTT
* *
33230 TTCATTTTTGTATCTGTCT
1 TTCATTTCTGAATCTGTCT
33249 CGTCCATGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.17, G:0.10, T:0.60
Consensus pattern (21 bp):
TTCATTTCTGAATCTGTCTTT
Found at i:36142 original size:49 final size:48
Alignment explanation
Indices: 36027--36141 Score: 133
Period size: 49 Copynumber: 2.4 Consensus size: 48
36017 ACATTTCCTA
* *
36027 CACTTTTTCTCAATTTTTACAACAAAATTGAACCTTTAATTTTCCTCG
1 CACTTTTTCTCAATTTTTACAACAAAATTGAACATTTAATTTTCATCG
* * * * *
36075 CACCCTTTTCTCAATTTTTATGAA-AAAATTGAATATTTACTTTTCATTG
1 CA-CTTTTTCTCAATTTTTA-CAACAAAATTGAACATTTAATTTTCATCG
*
36124 CACTTTTTATCAATTTTT
1 CACTTTTTCTCAATTTTT
36142 TTCAAAAATT
Statistics
Matches: 56, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
48 16 0.29
49 38 0.68
50 2 0.04
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.48
Consensus pattern (48 bp):
CACTTTTTCTCAATTTTTACAACAAAATTGAACATTTAATTTTCATCG
Found at i:39050 original size:35 final size:35
Alignment explanation
Indices: 38999--39235 Score: 284
Period size: 35 Copynumber: 6.9 Consensus size: 35
38989 GTAGGAAAAA
* * *
38999 GTAAACAACTTAATTCGGTGTAATAAAATAATTTG
1 GTAATCAACTTAATTCGGTGTAATTAAGTAATTTG
**
39034 GTAATCAACTTAATTCGGTGTAATTAAGTAGCTTG
1 GTAATCAACTTAATTCGGTGTAATTAAGTAATTTG
* **
39069 GTAATCAACTTAATTTGGTGTAATTAAGTAGCTTG
1 GTAATCAACTTAATTCGGTGTAATTAAGTAATTTG
*
39104 GT-A--AAC-AAATTCGGTGTAATTAAGTAATTTG
1 GTAATCAACTTAATTCGGTGTAATTAAGTAATTTG
*
39135 GTAATCAACTTAATTCAGTGTAATTAAGTAATTTG
1 GTAATCAACTTAATTCGGTGTAATTAAGTAATTTG
* * **
39170 GTAATCAATTTAATTCGGTGTAATTAAGTAAATCA
1 GTAATCAACTTAATTCGGTGTAATTAAGTAATTTG
* * * *
39205 GTAATCAGCGTAAGTCGGTGTAATTCAGTAA
1 GTAATCAACTTAATTCGGTGTAATTAAGTAA
39236 ATAATCAAGT
Statistics
Matches: 176, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
31 23 0.13
32 4 0.02
34 4 0.02
35 145 0.82
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.36
Consensus pattern (35 bp):
GTAATCAACTTAATTCGGTGTAATTAAGTAATTTG
Found at i:39137 original size:66 final size:68
Alignment explanation
Indices: 38999--39200 Score: 237
Period size: 66 Copynumber: 2.9 Consensus size: 68
38989 GTAGGAAAAA
* * * * * *
38999 GTAAACAACTTAATTCGGTGTAATAAAATAATTTGGTAATCAACTTAATTCGGTGTAATTAAGTA
1 GTAATCAACTTAATTCAGTGTAATTAAGTAACTTGGTAAACAA--TAATTCGGTGTAATTAAGTA
*
39064 GCTTG
64 ACTTG
** * *
39069 GTAATCAACTTAATTTGGTGTAATTAAGTAGCTTGGTAAAC-A-AATTCGGTGTAATTAAGTAAT
1 GTAATCAACTTAATTCAGTGTAATTAAGTAACTTGGTAAACAATAATTCGGTGTAATTAAGTAAC
39132 TTG
66 TTG
* *
39135 GTAATCAACTTAATTCAGTGTAATTAAGTAATTTGGTAATCAATTTAATTCGGTGTAATTAAGTA
1 GTAATCAACTTAATTCAGTGTAATTAAGTAACTTGGTAAACAA--TAATTCGGTGTAATTAAGTA
39200 A
64 A
39201 ATCAGTAATC
Statistics
Matches: 114, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
66 58 0.51
67 1 0.01
69 1 0.01
70 54 0.47
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (68 bp):
GTAATCAACTTAATTCAGTGTAATTAAGTAACTTGGTAAACAATAATTCGGTGTAATTAAGTAAC
TTG
Found at i:39190 original size:101 final size:101
Alignment explanation
Indices: 39010--39199 Score: 317
Period size: 101 Copynumber: 1.9 Consensus size: 101
39000 TAAACAACTT
* *
39010 AATTCGGTGTAATAAAATAATTTGGTAATCAACTTAATTCGGTGTAATTAAGTAGCTTGGTAATC
1 AATTCGGTGTAATAAAATAATTTGGTAATCAACTTAATTCAGTGTAATTAAGTAACTTGGTAATC
*
39075 AACTTAATTTGGTGTAATTAAGTAGCTTGGTAAACA
66 AACTTAATTCGGTGTAATTAAGTAGCTTGGTAAACA
* * *
39111 AATTCGGTGTAATTAAGTAATTTGGTAATCAACTTAATTCAGTGTAATTAAGTAATTTGGTAATC
1 AATTCGGTGTAATAAAATAATTTGGTAATCAACTTAATTCAGTGTAATTAAGTAACTTGGTAATC
*
39176 AATTTAATTCGGTGTAATTAAGTA
66 AACTTAATTCGGTGTAATTAAGTA
39200 AATCAGTAAT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 82 1.00
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (101 bp):
AATTCGGTGTAATAAAATAATTTGGTAATCAACTTAATTCAGTGTAATTAAGTAACTTGGTAATC
AACTTAATTCGGTGTAATTAAGTAGCTTGGTAAACA
Found at i:39241 original size:101 final size:98
Alignment explanation
Indices: 39035--39243 Score: 231
Period size: 101 Copynumber: 2.1 Consensus size: 98
39025 AATAATTTGG
* * * *
39035 TAATCAACTTAATTCGGTGTAATTAAGTAGCTTGGTAATCAACTTAATTTGGTGTAATTAAGTAG
1 TAATCAACTTAATTCAGTGTAATTAAGTAACTTGGTAATCAACTTAATTCGGTGTAATTAAGTAA
* ** * *
39100 CTTGGTAAACAAATTCGGTGTAATTAAGTAATTTGG
66 ATCAGTAAACAAAGTCGGTGTAATTAAGTAA--T-A
* *
39136 TAATCAACTTAATTCAGTGTAATTAAGTAATTTGGTAATCAATTTAATTCGGTGTAATTAAGTAA
1 TAATCAACTTAATTCAGTGTAATTAAGTAACTTGGTAATCAACTTAATTCGGTGTAATTAAGTAA
* *
39201 ATCAGTAATCAGCGTAAGTCGGTGTAATTCAGTAA-A
66 ATCAGTAA--A-C-AAAGTCGGTGTAATTAAGTAATA
39237 TAATCAA
1 TAATCAA
39244 GTGACTTAAC
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
101 71 0.78
103 1 0.01
104 1 0.01
105 18 0.20
ACGTcount: A:0.36, C:0.10, G:0.18, T:0.36
Consensus pattern (98 bp):
TAATCAACTTAATTCAGTGTAATTAAGTAACTTGGTAATCAACTTAATTCGGTGTAATTAAGTAA
ATCAGTAAACAAAGTCGGTGTAATTAAGTAATA
Found at i:44695 original size:19 final size:18
Alignment explanation
Indices: 44671--44710 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
44661 TTGAAGATTT
*
44671 ATTGAAGATAATTTGAAGA
1 ATTGAAGACAA-TTGAAGA
*
44690 ATTGAAGACCATTGAAGA
1 ATTGAAGACAATTGAAGA
44708 ATT
1 ATT
44711 ATTTCAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.45, C:0.05, G:0.20, T:0.30
Consensus pattern (18 bp):
ATTGAAGACAATTGAAGA
Found at i:50044 original size:156 final size:155
Alignment explanation
Indices: 49747--50057 Score: 559
Period size: 156 Copynumber: 2.0 Consensus size: 155
49737 GTGATATGAG
49747 CTTATTATTTATTACTTCTATGATTGCCTATTTCTAGAACTTCTATTTAATTTTTATTGAAATTA
1 CTTATTATTTATTACTTCTATGATTGCCTATTTCTAGAACTTCTATTTAATTTTTATTGAAATTA
49812 CACTAATGAAAGTATGTTATGGATATGTCAAGAACAAATGTGGAGGACTACTTATATAAAAGGGT
66 CACTAATGAAAGTATGTTATGGATATGTCAAGAACAAATGTGGAGGACTACTTATATAAAAGGGT
49877 AGTTTAAAAAAAATCATAAAAGGGTA
131 AGTTT-AAAAAAATCATAAAAGGGTA
* *
49903 CTTATTATTTATTACTTCTATGATTGCCTATTTCTAGAACTTGTGTTTAATTTTTATTGAAATTA
1 CTTATTATTTATTACTTCTATGATTGCCTATTTCTAGAACTTCTATTTAATTTTTATTGAAATTA
49968 CACTAATGAAAGTATGTTATGGATAATGTCAAGAACAAATGATGGAGGACTACTTATATAAAAGG
66 CACTAATGAAAGTATGTTATGGAT-ATGTCAAGAACAAATG-TGGAGGACTACTTATATAAAAGG
50033 GTAGTTTAAAAAAATTTCATAAAAG
129 GTAGTTTAAAAAAA--TCATAAAAG
50058 AAGGTGTTTT
Statistics
Matches: 149, Mismatches: 2, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
156 87 0.58
157 23 0.15
158 30 0.20
159 9 0.06
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (155 bp):
CTTATTATTTATTACTTCTATGATTGCCTATTTCTAGAACTTCTATTTAATTTTTATTGAAATTA
CACTAATGAAAGTATGTTATGGATATGTCAAGAACAAATGTGGAGGACTACTTATATAAAAGGGT
AGTTTAAAAAAATCATAAAAGGGTA
Found at i:60086 original size:157 final size:158
Alignment explanation
Indices: 59879--60189 Score: 588
Period size: 157 Copynumber: 2.0 Consensus size: 158
59869 GTGATATGAG
59879 CTTATTATTTATTACTTCTATGATTGCCTATTTCTAGAACTTCTATTTAATTTTTATTGAAATTA
1 CTTATTATTTATTACTTCTATGATTGCCTATTTCTAGAACTTCTATTTAATTTTTATTGAAATTA
59944 CACTAATGAAAGTATGTTATGGATATGTCAAGAACAAATGTGGAGGACTACTTATATAAAAGGGT
66 CACTAATGAAAGTATGTTATGGATATGTCAAGAACAAATGTGGAGGACTACTTATATAAAAGGGT
60009 AGTTTAAAAAAAA-ATCATAAAAGGGTA
131 AGTTTAAAAAAAATATCATAAAAGGGTA
* *
60036 CTTATTATTTATTACTTCTATGATTGCCTATTTCTAGAACTTGTGTTTAATTTTTATTGAAATTA
1 CTTATTATTTATTACTTCTATGATTGCCTATTTCTAGAACTTCTATTTAATTTTTATTGAAATTA
60101 CACTAATGAAAGTATGTTATGGATATGTCAAGAACAAATGTGGAGGACTACTTATATAAAAGGGT
66 CACTAATGAAAGTATGTTATGGATATGTCAAGAACAAATGTGGAGGACTACTTATATAAAAGGGT
*
60166 AGTTTAAAAAAAATTTCATAAAAG
131 AGTTTAAAAAAAATATCATAAAAG
60190 AAGTGTTTTC
Statistics
Matches: 150, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
157 141 0.94
158 9 0.06
ACGTcount: A:0.38, C:0.09, G:0.15, T:0.38
Consensus pattern (158 bp):
CTTATTATTTATTACTTCTATGATTGCCTATTTCTAGAACTTCTATTTAATTTTTATTGAAATTA
CACTAATGAAAGTATGTTATGGATATGTCAAGAACAAATGTGGAGGACTACTTATATAAAAGGGT
AGTTTAAAAAAAATATCATAAAAGGGTA
Found at i:62263 original size:19 final size:18
Alignment explanation
Indices: 62239--62278 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
62229 TTGAAGATTT
*
62239 ATTGAAGATAATTTGAAGA
1 ATTGAAGACAA-TTGAAGA
*
62258 ATTGAAGACCATTGAAGA
1 ATTGAAGACAATTGAAGA
62276 ATT
1 ATT
62279 ATTTCAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.45, C:0.05, G:0.20, T:0.30
Consensus pattern (18 bp):
ATTGAAGACAATTGAAGA
Found at i:63420 original size:190 final size:190
Alignment explanation
Indices: 63097--63478 Score: 764
Period size: 190 Copynumber: 2.0 Consensus size: 190
63087 GAGATTATTG
63097 TGCTTATAATTTGATATTTGTTCTTGATAGATAGTAACCGAGTCTCTGTTTTATTTTATGATCTT
1 TGCTTATAATTTGATATTTGTTCTTGATAGATAGTAACCGAGTCTCTGTTTTATTTTATGATCTT
63162 GATACTTGTTGATTTAGATGGCCACTAATGATATAATTTTACGGATCTATAGTTAAATCAAACGA
66 GATACTTGTTGATTTAGATGGCCACTAATGATATAATTTTACGGATCTATAGTTAAATCAAACGA
63227 TGGGTGACCCCAGAGTTTGGTTGTTTGGTAACAAATTGGGGATGCTTGATTGCAACTCAA
131 TGGGTGACCCCAGAGTTTGGTTGTTTGGTAACAAATTGGGGATGCTTGATTGCAACTCAA
63287 TGCTTATAATTTGATATTTGTTCTTGATAGATAGTAACCGAGTCTCTGTTTTATTTTATGATCTT
1 TGCTTATAATTTGATATTTGTTCTTGATAGATAGTAACCGAGTCTCTGTTTTATTTTATGATCTT
63352 GATACTTGTTGATTTAGATGGCCACTAATGATATAATTTTACGGATCTATAGTTAAATCAAACGA
66 GATACTTGTTGATTTAGATGGCCACTAATGATATAATTTTACGGATCTATAGTTAAATCAAACGA
63417 TGGGTGACCCCAGAGTTTGGTTGTTTGGTAACAAATTGGGGATGCTTGATTGCAACTCAA
131 TGGGTGACCCCAGAGTTTGGTTGTTTGGTAACAAATTGGGGATGCTTGATTGCAACTCAA
63477 TG
1 TG
63479 GGACGAGTTT
Statistics
Matches: 192, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
190 192 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.40
Consensus pattern (190 bp):
TGCTTATAATTTGATATTTGTTCTTGATAGATAGTAACCGAGTCTCTGTTTTATTTTATGATCTT
GATACTTGTTGATTTAGATGGCCACTAATGATATAATTTTACGGATCTATAGTTAAATCAAACGA
TGGGTGACCCCAGAGTTTGGTTGTTTGGTAACAAATTGGGGATGCTTGATTGCAACTCAA
Found at i:69145 original size:20 final size:20
Alignment explanation
Indices: 69120--69159 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
69110 GACATAACTT
69120 GAACCAAGAAGGTCCTATGG
1 GAACCAAGAAGGTCCTATGG
*
69140 GAACCAAGAAGGTCTTATGG
1 GAACCAAGAAGGTCCTATGG
69160 TACGGTGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.17
Consensus pattern (20 bp):
GAACCAAGAAGGTCCTATGG
Found at i:74162 original size:12 final size:12
Alignment explanation
Indices: 74145--74171 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
74135 AATCTACGTG
74145 AAAAAAAATTAA
1 AAAAAAAATTAA
74157 AAAAAAAATTAA
1 AAAAAAAATTAA
74169 AAA
1 AAA
74172 CCTTAAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAAAAAATTAA
Found at i:75106 original size:36 final size:36
Alignment explanation
Indices: 75066--75246 Score: 127
Period size: 37 Copynumber: 5.0 Consensus size: 36
75056 GATTAAGTTC
*
75066 TTTATTGACTCCACCTAATTACCCTGAATTAAGCCT
1 TTTATTGACTCCACTTAATTACCCTGAATTAAGCCT
* * * ** * *
75102 TTTATTG-TTTCACTGAATCT-CTTTTTAAATTAAG-TT
1 TTTATTGACTCCACTTAAT-TAC--CCTGAATTAAGCCT
* *
75138 CTTTATTGACTTCACTTAATTACCCAGAATTAAGCCT
1 -TTTATTGACTCCACTTAATTACCCTGAATTAAGCCT
* * *
75175 TTTATTGA-TGCTACTTAATTACCCTAAATTAAGTCCC
1 TTTATTGACT-CCACTTAATTACCCTGAATTAAG-CCT
* * * *
75212 TTTATTGACGCTACTTAACTACCCCGAATTAAGCC
1 TTTATTGACTCCACTTAATTACCCTGAATTAAGCC
75247 CCTAACTTGA
Statistics
Matches: 111, Mismatches: 24, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
35 9 0.08
36 45 0.41
37 47 0.42
38 10 0.09
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (36 bp):
TTTATTGACTCCACTTAATTACCCTGAATTAAGCCT
Found at i:75121 original size:73 final size:73
Alignment explanation
Indices: 75019--75181 Score: 254
Period size: 73 Copynumber: 2.2 Consensus size: 73
75009 AATTTTTATA
* ** * *
75019 AATTAAGCCCTTTATTGTTTTGCTTAATCTCTTTTTAGATTAAGTTCTTTATTGACTCCACCTAA
1 AATTAAGCCTTTTATTGTTTCACTGAATCTCTTTTTAAATTAAGTTCTTTATTGACTCCACCTAA
*
75084 TTACCCTG
66 TTACCCAG
* *
75092 AATTAAGCCTTTTATTGTTTCACTGAATCTCTTTTTAAATTAAGTTCTTTATTGACTTCACTTAA
1 AATTAAGCCTTTTATTGTTTCACTGAATCTCTTTTTAAATTAAGTTCTTTATTGACTCCACCTAA
75157 TTACCCAG
66 TTACCCAG
75165 AATTAAGCCTTTTATTG
1 AATTAAGCCTTTTATTG
75182 ATGCTACTTA
Statistics
Matches: 82, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
73 82 1.00
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.47
Consensus pattern (73 bp):
AATTAAGCCTTTTATTGTTTCACTGAATCTCTTTTTAAATTAAGTTCTTTATTGACTCCACCTAA
TTACCCAG
Found at i:75215 original size:73 final size:72
Alignment explanation
Indices: 75057--75246 Score: 213
Period size: 73 Copynumber: 2.6 Consensus size: 72
75047 CTCTTTTTAG
* * * *
75057 ATTAAGTTCTTTATTGACTCCACCTAATTACCCTGAATTAAGCCTTTTATTGTTTCACTGAATCT
1 ATTAAGTTCTTTATTGACTCCACTTAATTACCCAGAATTAAGCCTTTTATTGATGCACTGAATCT
**
75122 CTTTTTAA
66 C-TCCTAA
* *
75130 ATTAAGTTCTTTATTGACTTCACTTAATTACCCAGAATTAAGCCTTTTATTGATGCTACTTAAT-
1 ATTAAGTTCTTTATTGACTCCACTTAATTACCCAGAATTAAGCCTTTTATTGATGC-ACTGAATC
75194 TAC-CCTAA
65 T-CTCCTAA
* * * * *
75202 ATTAAGTCCCTTTATTGACGCTACTTAACTACCCCGAATTAAGCC
1 ATTAAGT-TCTTTATTGACTCCACTTAATTACCCAGAATTAAGCC
75247 CCTAACTTGA
Statistics
Matches: 100, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
72 10 0.10
73 83 0.83
74 7 0.07
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (72 bp):
ATTAAGTTCTTTATTGACTCCACTTAATTACCCAGAATTAAGCCTTTTATTGATGCACTGAATCT
CTCCTAA
Found at i:75225 original size:37 final size:37
Alignment explanation
Indices: 75127--75249 Score: 128
Period size: 37 Copynumber: 3.4 Consensus size: 37
75117 AATCTCTTTT
* *
75127 TAAATTAAGT-TCTTTATTGAC-TTCACTTAATTACCC
1 TAAATTAAGTCCCTTTATTGACGCT-ACTTAATTACCC
* *
75163 -AGAATTAAG-CCTTTTATTGATGCTACTTAATTACCC
1 TA-AATTAAGTCCCTTTATTGACGCTACTTAATTACCC
*
75199 TAAATTAAGTCCCTTTATTGACGCTACTTAACTACCC
1 TAAATTAAGTCCCTTTATTGACGCTACTTAATTACCC
** *
75236 CGAATTAAGCCCCT
1 TAAATTAAGTCCCT
75250 AACTTGACTT
Statistics
Matches: 72, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
35 1 0.01
36 34 0.47
37 37 0.51
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (37 bp):
TAAATTAAGTCCCTTTATTGACGCTACTTAATTACCC
Found at i:75257 original size:37 final size:36
Alignment explanation
Indices: 75129--75247 Score: 134
Period size: 36 Copynumber: 3.3 Consensus size: 36
75119 TCTCTTTTTA
** *
75129 AATTAAGTTCTTTATTGAC-TTCACTTAATTACCCAG
1 AATTAAGCCCTTTATTGACGCT-ACTTAATTACCCAG
* *
75165 AATTAAGCCTTTTATTGATGCTACTTAATTACCCTA-
1 AATTAAGCCCTTTATTGACGCTACTTAATTACCC-AG
* *
75201 AATTAAGTCCCTTTATTGACGCTACTTAACTACCCCG
1 AATTAAG-CCCTTTATTGACGCTACTTAATTACCCAG
75238 AATTAAGCCC
1 AATTAAGCCC
75248 CTAACTTGAC
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
36 37 0.53
37 33 0.47
ACGTcount: A:0.30, C:0.24, G:0.09, T:0.37
Consensus pattern (36 bp):
AATTAAGCCCTTTATTGACGCTACTTAATTACCCAG
Found at i:75279 original size:37 final size:37
Alignment explanation
Indices: 75238--75347 Score: 132
Period size: 37 Copynumber: 3.0 Consensus size: 37
75228 AACTACCCCG
**
75238 AATTAAGCCCCTAACT-TGACTTAATTTTCTTCCTTGA
1 AATTAAGCCCCTAACTCT-ACTTAATTCCCTTCCTTGA
* *
75275 AATTAAGTCCTTAACTCTACTTAATTCCCTTCCTTGA
1 AATTAAGCCCCTAACTCTACTTAATTCCCTTCCTTGA
* * * *
75312 AACTAAGTCCTTATCTCTACTTAATTCCCTTCCTTG
1 AATTAAGCCCCTAACTCTACTTAATTCCCTTCCTTG
75348 GAACTAAGTC
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
37 65 0.98
38 1 0.02
ACGTcount: A:0.25, C:0.27, G:0.06, T:0.41
Consensus pattern (37 bp):
AATTAAGCCCCTAACTCTACTTAATTCCCTTCCTTGA
Found at i:75353 original size:37 final size:37
Alignment explanation
Indices: 75256--75373 Score: 173
Period size: 37 Copynumber: 3.2 Consensus size: 37
75246 CCCTAACTTG
** * *
75256 ACTTAATTTTCTTCCTTGAAATTAAGTCCTTAACTCT
1 ACTTAATTCCCTTCCTTGAAACTAAGTCCTTATCTCT
75293 ACTTAATTCCCTTCCTTGAAACTAAGTCCTTATCTCT
1 ACTTAATTCCCTTCCTTGAAACTAAGTCCTTATCTCT
* * *
75330 ACTTAATTCCCTTCCTTGGAACTAAGTCCTTTTCTTT
1 ACTTAATTCCCTTCCTTGAAACTAAGTCCTTATCTCT
75367 ACTTAAT
1 ACTTAAT
75374 CCCATTGGGT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.25, C:0.25, G:0.06, T:0.44
Consensus pattern (37 bp):
ACTTAATTCCCTTCCTTGAAACTAAGTCCTTATCTCT
Found at i:75535 original size:41 final size:41
Alignment explanation
Indices: 75489--75812 Score: 350
Period size: 41 Copynumber: 8.4 Consensus size: 41
75479 AATTACCCTG
* *
75489 AATTAAGTCTGTGCTTGTCTTTACCTAATTTCCTTCCTTAA
1 AATTAAGTCTGTGCTTATCTTTACCTAATTTCCTTCCTTGA
* * *
75530 AATTAAGTTTGTGCTTATCTTTACTTAA-TTAC--CC-TG-
1 AATTAAGTCTGTGCTTATCTTTACCTAATTTCCTTCCTTGA
* * *
75566 AATTAAGTCTGTGTTTGTCTTTTACCTAATTTCCTTCATTGA
1 AATTAAGTCTGTGCTTATC-TTTACCTAATTTCCTTCCTTGA
* *
75608 AATTAAGTCTGTGCTTATCTTTACTTAA-TTAC--CC-TG-
1 AATTAAGTCTGTGCTTATCTTTACCTAATTTCCTTCCTTGA
*
75644 AATTAAGTCTGTG----------CCTAATTTCCTTCATTGA
1 AATTAAGTCTGTGCTTATCTTTACCTAATTTCCTTCCTTGA
*
75675 AATTAAGTCTGTGCTT-TCTGTA-CTCAATTTCCTTCCTTGA
1 AATTAAGTCTGTGCTTATCTTTACCT-AATTTCCTTCCTTGA
75715 AATTAAGTCTGTGCTTATCTTTACCTAATTTCCTTCCTTGA
1 AATTAAGTCTGTGCTTATCTTTACCTAATTTCCTTCCTTGA
* *
75756 AATTAAGTCTGTGCTTATCTTTACCTAATTTCTTTTCTTGA
1 AATTAAGTCTGTGCTTATCTTTACCTAATTTCCTTCCTTGA
75797 AATTAAGTCTGTGCTT
1 AATTAAGTCTGTGCTT
75813 TACATTTACT
Statistics
Matches: 237, Mismatches: 23, Indels: 46
0.77 0.08 0.15
Matches are distributed among these distances:
26 4 0.02
27 3 0.01
29 1 0.00
30 2 0.01
31 13 0.05
36 29 0.12
37 11 0.05
38 6 0.03
39 2 0.01
40 37 0.16
41 110 0.46
42 19 0.08
ACGTcount: A:0.23, C:0.19, G:0.11, T:0.47
Consensus pattern (41 bp):
AATTAAGTCTGTGCTTATCTTTACCTAATTTCCTTCCTTGA
Found at i:75628 original size:78 final size:77
Alignment explanation
Indices: 75452--75879 Score: 419
Period size: 78 Copynumber: 5.6 Consensus size: 77
75442 TTAATTCTTG
* *
75452 TGAAATTAAGTCTTTGCTGA--TTTACTTAATTACCCTGAATTAAGTCTGTGCTTGTCTTTACCT
1 TGAAATTAAGTCTGTGCTTATCTTTACTTAATTACCCTGAATTAAGTCTGTGCTTGTCTTTACCT
*
75515 AATTTCCTTCCT
66 AATTTCCTTCAT
* * *
75527 TAAAATTAAGTTTGTGCTTATCTTTACTTAATTACCCTGAATTAAGTCTGTGTTTGTCTTTTACC
1 TGAAATTAAGTCTGTGCTTATCTTTACTTAATTACCCTGAATTAAGTCTGTGCTTGTC-TTTACC
75592 TAATTTCCTTCAT
65 TAATTTCCTTCAT
75605 TGAAATTAAGTCTGTGCTTATCTTTACTTAATTACCCTGAATTAAGTC--TG--TG------CCT
1 TGAAATTAAGTCTGTGCTTATCTTTACTTAATTACCCTGAATTAAGTCTGTGCTTGTCTTTACCT
75660 AATTTCCTTCAT
66 AATTTCCTTCAT
* * * *
75672 TGAAATTAAGTCTGTGCTT-TCTGTACTCAATTTCCTTCCTTGAAATTAAGTCTGTGCTTATCTT
1 TGAAATTAAGTCTGTGCTTATCTTTACTTAA-TTAC--CC-TG-AATTAAGTCTGTGCTTGTCTT
*
75736 TACCTAATTTCCTTCCT
61 TACCTAATTTCCTTCAT
* * *
75753 TGAAATTAAGTCTGTGCTTATCTTTACCTAATTTCTTTTCTTGAAATTAAGTCTGTGCTT-TACA
1 TGAAATTAAGTCTGTGCTTATCTTTACTTAATTAC----CCTG-AATTAAGTCTGTGCTTGT-C-
* *
75817 TTTACTTAATTACC--C--
59 TTTACCTAATTTCCTTCAT
* *
75832 TG-AATTAAGTTCTTTGACTTGT-TTTACTTAATTACCCTGAATTAAGTC
1 TGAAATTAAG-TCTGTG-CTTATCTTTACTTAATTACCCTGAATTAAGTC
75880 CTTTAACTGC
Statistics
Matches: 303, Mismatches: 25, Indels: 51
0.80 0.07 0.13
Matches are distributed among these distances:
66 9 0.03
67 37 0.12
69 2 0.01
70 2 0.01
71 9 0.03
73 2 0.01
74 11 0.04
75 20 0.07
76 2 0.01
77 35 0.12
78 71 0.23
79 18 0.06
80 4 0.01
81 38 0.13
82 28 0.09
83 15 0.05
ACGTcount: A:0.24, C:0.19, G:0.11, T:0.46
Consensus pattern (77 bp):
TGAAATTAAGTCTGTGCTTATCTTTACTTAATTACCCTGAATTAAGTCTGTGCTTGTCTTTACCT
AATTTCCTTCAT
Found at i:75682 original size:31 final size:31
Alignment explanation
Indices: 75590--75688 Score: 101
Period size: 31 Copynumber: 3.0 Consensus size: 31
75580 TTGTCTTTTA
75590 CCTAATTTCCTTCATTGAAATTAAGTCTGTG
1 CCTAATTTCCTTCATTGAAATTAAGTCTGTG
* * * *
75621 CTTATCTTTACTTAATT-ACCCTGAATTAAGTCTGTG
1 CCTA-ATTTCCTTCATTGA-----AATTAAGTCTGTG
75657 CCTAATTTCCTTCATTGAAATTAAGTCTGTG
1 CCTAATTTCCTTCATTGAAATTAAGTCTGTG
75688 C
1 C
75689 TTTCTGTACT
Statistics
Matches: 53, Mismatches: 8, Indels: 14
0.71 0.11 0.19
Matches are distributed among these distances:
31 18 0.34
32 9 0.17
35 9 0.17
36 17 0.32
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.42
Consensus pattern (31 bp):
CCTAATTTCCTTCATTGAAATTAAGTCTGTG
Found at i:75768 original size:148 final size:145
Alignment explanation
Indices: 75512--75785 Score: 399
Period size: 148 Copynumber: 1.9 Consensus size: 145
75502 CTTGTCTTTA
* * * *
75512 CCTAATTTCCTTCCTTAAAATTAAGTTTGTGCTTATCTTTACTTAATTACCCTGAATTAAGTCTG
1 CCTAATTTCCTTCATTAAAATTAAGTCTGTGCTTATCTGTACTCAATTACCCTGAATTAAGTCTG
* * *
75577 TGTTTGTCTTTTACCTAATTTCCTTCATTGAAATTAAGTCTGTGCTTATCTTTACTTAATTACCC
66 TGCTTATCTTTTACCTAATTTCCTTCATTGAAATTAAGTCTGTGCTTATCTTTACCTAATTACCC
75642 TGAATTAAGTCTGTG
131 TGAATTAAGTCTGTG
* *
75657 CCTAATTTCCTTCATTGAAATTAAGTCTGTGCTT-TCTGTACTCAATTTCCTTCCTTGAAATTAA
1 CCTAATTTCCTTCATTAAAATTAAGTCTGTGCTTATCTGTACTCAA-TTAC--CC-TG-AATTAA
*
75721 GTCTGTGCTTATC-TTTACCTAATTTCCTTCCTTGAAATTAAGTCTGTGCTTATCTTTACCTAAT
61 GTCTGTGCTTATCTTTTACCTAATTTCCTTCATTGAAATTAAGTCTGTGCTTATCTTTACCTAAT
75785 T
126 T
75786 TCTTTTCTTG
Statistics
Matches: 114, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
144 9 0.08
145 34 0.30
147 2 0.02
148 52 0.46
149 17 0.15
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.46
Consensus pattern (145 bp):
CCTAATTTCCTTCATTAAAATTAAGTCTGTGCTTATCTGTACTCAATTACCCTGAATTAAGTCTG
TGCTTATCTTTTACCTAATTTCCTTCATTGAAATTAAGTCTGTGCTTATCTTTACCTAATTACCC
TGAATTAAGTCTGTG
Found at i:75858 original size:37 final size:37
Alignment explanation
Indices: 75817--76136 Score: 358
Period size: 37 Copynumber: 8.6 Consensus size: 37
75807 GTGCTTTACA
75817 TTTACTTAATTACCCTGAATTAAGTTCTTTGACTTG-T
1 TTTACTTAATTACCCTGAATTAAGTTCTTTGAC-TGCT
* *
75854 TTTACTTAATTACCCTGAATTAAGTCCTTTAACTGCT
1 TTTACTTAATTACCCTGAATTAAGTTCTTTGACTGCT
* * *
75891 TTTACCTAATTTCCGTGAATTAAG-TCTTTTGACTGCT
1 TTTACTTAATTACCCTGAATTAAGTTC-TTTGACTGCT
* **
75928 TTCACTTAATTTTCCTGAATTAAGTTCTTTGACTGCT
1 TTTACTTAATTACCCTGAATTAAGTTCTTTGACTGCT
* *
75965 TTTACTTAATTTCCCTGAATTAAGTTTTTTGACTGCT
1 TTTACTTAATTACCCTGAATTAAGTTCTTTGACTGCT
* *
76002 TTTACTTAATTACCCTGAATTAAATTCTTTAACTGCT
1 TTTACTTAATTACCCTGAATTAAGTTCTTTGACTGCT
* * * * ** *
76039 CTTTTCTTAATCATCCTGGATTAA-AACTTTAACTGCT
1 -TTTACTTAATTACCCTGAATTAAGTTCTTTGACTGCT
* *
76076 CTTACTTAATTACCCTGAATTAAGTTCTTTGATTGCT
1 TTTACTTAATTACCCTGAATTAAGTTCTTTGACTGCT
* * * *
76113 CTTTTCCTAATCACCCTGGATTAA
1 -TTTACTTAATTACCCTGAATTAA
76137 AACTTTAACT
Statistics
Matches: 239, Mismatches: 38, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
36 21 0.09
37 179 0.75
38 39 0.16
ACGTcount: A:0.25, C:0.20, G:0.10, T:0.46
Consensus pattern (37 bp):
TTTACTTAATTACCCTGAATTAAGTTCTTTGACTGCT
Found at i:76216 original size:41 final size:41
Alignment explanation
Indices: 76115--76347 Score: 369
Period size: 41 Copynumber: 5.7 Consensus size: 41
76105 TGATTGCTCT
* * * *
76115 TTTCCTAATCACCCTGGATTAAAACTTTAACTAT-TCTGAT
1 TTTCTTAATCGCCCTGGATTAAAACTTTAACTATGTTTGAC
* *
76155 TTTCTTAATCGCCCTAGATTAAAACCTTAACTATGTTTGAC
1 TTTCTTAATCGCCCTGGATTAAAACTTTAACTATGTTTGAC
*
76196 TTTCTTAATCGCCCTGGATTAAAACTTTAACTATGTCTGAC
1 TTTCTTAATCGCCCTGGATTAAAACTTTAACTATGTTTGAC
*
76237 TTTCTTAATCGTCCTGGATTAAAACTTTAACTATGTTTGAC
1 TTTCTTAATCGCCCTGGATTAAAACTTTAACTATGTTTGAC
*
76278 TTTCTTAATCGCCCTAGATTAAAACTTTAACTATGTTTGAC
1 TTTCTTAATCGCCCTGGATTAAAACTTTAACTATGTTTGAC
*
76319 TTTCTTAATCACCCTGGATTAAAACTTTA
1 TTTCTTAATCGCCCTGGATTAAAACTTTA
76348 CTTTTCTTAA
Statistics
Matches: 177, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
40 30 0.17
41 147 0.83
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.41
Consensus pattern (41 bp):
TTTCTTAATCGCCCTGGATTAAAACTTTAACTATGTTTGAC
Found at i:84996 original size:10 final size:10
Alignment explanation
Indices: 84981--85005 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
84971 GAGGACTCTA
84981 GAATTTTCTG
1 GAATTTTCTG
84991 GAATTTTCTG
1 GAATTTTCTG
85001 GAATT
1 GAATT
85006 AAGCAGCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.08, G:0.20, T:0.48
Consensus pattern (10 bp):
GAATTTTCTG
Done.