genome.fa.s11592.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011592.1 Corchorus capsularis cultivar CVL-1 contig11613, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75245

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2895--2924	11	2.7	11	94	0	51	40	0	20	40	1.52
2907--2942	19	1.9	18	88	5	54	41	5	22	30	1.76
4290--4320	6	5.3	6	96	3	55	35	0	12	51	1.40
4612--4659	20	2.5	19	90	6	78	60	6	14	18	1.55
8648--8677	11	2.7	11	94	0	51	40	0	20	40	1.52
8660--8695	19	1.9	18	88	5	54	41	5	22	30	1.76
8779--8806	8	3.5	8	100	0	56	14	0	28	57	1.38
9216--9270	6	9.3	6	98	2	103	32	0	16	50	1.45
20131--20230	27	3.6	27	77	8	94	14	14	26	46	1.81
20152--20226	27	2.7	27	87	2	105	16	14	29	40	1.88
20331--20374	23	1.9	23	90	0	70	27	9	15	47	1.76
20330--20381	23	2.3	23	82	0	68	25	9	17	48	1.77
24253--24305	17	3.1	17	97	0	97	43	11	20	24	1.85
24389--24502	20	5.9	20	75	13	96	50	5	24	19	1.68
24432--24466	15	2.4	14	90	4	52	48	5	25	20	1.71
24412--24488	35	2.2	34	84	4	100	50	6	24	18	1.70
24392--24683	55	5.4	55	69	16	180	48	6	23	20	1.72
24475--24605	35	3.7	35	90	3	192	46	7	24	21	1.77
24615--24900	22	13.9	19	69	21	104	50	5	20	23	1.68
24614--24683	19	3.5	20	86	7	99	50	5	22	21	1.70
24610--24683	20	3.8	20	82	3	98	52	5	21	20	1.66
24679--24958	108	2.6	108	78	7	293	52	3	19	24	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24705--24828	64	1.9	63	80	9	144	51	4	19	24	1.66
24894--24937	23	1.9	23	85	0	61	61	0	13	25	1.32
24875--25197	167	1.9	169	90	5	521	53	4	20	21	1.62
25175--25236	27	2.3	26	82	15	81	58	3	22	16	1.52
25135--25216	42	2.0	39	84	11	103	57	2	26	13	1.49
25169--25311	64	2.2	65	81	9	168	55	2	23	17	1.55
25244--25373	54	2.4	54	82	7	158	54	3	20	21	1.60
25295--25328	17	1.9	18	88	5	52	55	5	23	14	1.61
25134--25360	92	2.4	91	73	20	225	56	3	22	17	1.56
25249--25373	27	4.6	27	77	6	119	55	4	19	21	1.59
29290--29346	23	2.5	23	97	0	105	12	22	28	36	1.90
29338--29476	31	4.5	31	83	0	152	17	22	26	33	1.96
29338--29476	62	2.2	62	81	0	170	17	22	26	33	1.96
35280--35332	3	17.7	3	100	0	106	66	0	0	33	0.92
41863--41912	24	2.1	24	96	0	91	28	40	6	26	1.79
41866--41912	12	3.9	12	82	0	58	29	38	4	27	1.76
46092--46116	2	12.5	2	100	0	50	48	0	0	52	1.00
57220--57244	2	12.5	2	100	0	50	52	0	0	48	1.00
58136--58187	3	17.3	3	100	0	104	67	0	0	32	0.91
59164--59202	20	2.0	20	89	0	60	53	2	5	38	1.37
59337--59436	32	3.2	32	88	4	141	37	37	10	16	1.82
60249--60275	13	2.1	13	100	0	54	33	29	0	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61624--61666	21	2.0	21	100	0	86	32	13	30	23	1.93
64740--64781	6	7.2	6	83	5	59	33	30	30	4	1.78
71373--71522	44	3.4	44	75	9	128	36	14	12	37	1.83
71374--71537	22	7.5	21	72	10	107	35	15	11	37	1.83
71635--71677	22	2.0	22	85	0	59	30	23	13	32	1.93
72146--72200	16	3.5	16	92	2	85	25	14	27	32	1.95
72593--72675	23	3.6	23	69	9	62	21	27	34	15	1.94
72585--72697	46	2.5	46	80	2	111	23	23	37	15	1.93
72898--72941	17	2.6	18	85	10	65	27	47	15	9	1.76
72975--73109	16	8.4	16	75	6	112	31	38	20	9	1.85
72975--73112	32	4.3	31	82	7	136	31	38	21	9	1.85
72975--73109	48	2.8	47	79	8	139	31	38	20	9	1.85
73145--73214	21	3.3	20	69	18	61	40	11	0	48	1.39
73218--73264	21	2.2	21	92	0	76	29	8	6	55	1.55
73692--73736	16	2.9	16	86	3	56	31	44	22	2	1.65
73709--73823	16	7.2	16	91	5	173	29	39	23	7	1.83

Tables:   1

The End!