Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011593.1 Corchorus capsularis cultivar CVL-1 contig11614, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39045

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
239--424
33
5.6
33
83
0
192
23
25
30
21
1.99
294--420
18
7.6
17
69
15
77
22
21
33
22
1.97
629--692
29
2.2
29
83
8
76
14
28
29
28
1.95
717--742
2
13.0
2
100
0
52
50
0
0
50
1.00
826--888
25
2.4
26
84
5
83
14
34
26
23
1.93
844--899
25
2.3
23
77
17
58
19
33
28
17
1.95
2012--2088
36
2.1
36
82
0
91
25
19
32
22
1.97
4077--4147
16
4.5
16
92
3
108
25
16
26
30
1.97
4077--4147
31
2.2
32
90
7
110
25
16
26
30
1.97
4394--4468
22
3.4
22
83
7
98
38
10
10
40
1.75
4394--4476
44
1.9
44
87
2
123
38
12
10
38
1.78
4810--4912
53
1.9
53
100
0
206
57
7
7
27
1.54
5220--5258
2
20.0
2
85
15
55
46
2
0
51
1.14
5220--5258
9
4.4
9
93
3
62
46
2
0
51
1.14
5337--5384
24
2.0
23
84
4
60
31
4
6
58
1.42
9719--9785
27
2.5
26
92
4
107
13
20
29
35
1.91
9784--10020
55
4.3
55
96
1
431
50
7
16
25
1.71
9853--9994
26
5.2
26
63
21
76
50
7
18
23
1.71
10255--10594
43
7.7
42
75
11
256
56
7
19
17
1.64
10245--10608
22
16.5
22
72
13
209
55
6
18
18
1.64
10473--10528
15
3.9
15
74
9
62
57
5
21
16
1.59
10398--10609
116
1.8
114
79
4
246
56
8
17
16
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14141--14340
63
3.2
63
74
9
201
25
11
21
43
1.85
14168--14362
63
3.1
62
73
12
182
26
11
20
41
1.87
20591--20689
50
1.9
53
90
8
161
60
10
22
7
1.52
21803--21872
26
2.6
27
84
10
99
12
24
30
32
1.93
22483--22621
25
5.5
24
71
13
107
38
14
2
44
1.57
22476--22665
52
3.7
52
94
2
323
41
15
1
42
1.56
22507--22647
25
5.4
28
68
16
113
39
15
1
43
1.56
24453--24539
30
3.2
30
62
37
79
45
4
13
35
1.64
24439--24801
51
7.2
51
86
4
425
40
6
14
38
1.71
25515--25875
55
6.6
55
96
1
645
49
7
17
25
1.73
26059--26447
22
17.8
22
74
14
229
55
6
20
18
1.64
26109--26447
43
7.7
42
76
11
263
55
6
20
17
1.64
26326--26381
15
3.9
15
74
9
62
57
5
21
16
1.59
26251--26462
116
1.8
114
82
4
273
55
8
19
16
1.66
26180--26438
94
2.9
93
76
11
218
55
6
20
16
1.65
34044--34085
21
2.0
21
100
0
84
42
23
9
23
1.83
34448--34537
37
2.6
34
81
10
117
15
25
22
36
1.93
37244--37269
13
2.0
13
100
0
52
15
7
7
69
1.35

Tables:   1

The End!