Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011594.1 Corchorus capsularis cultivar CVL-1 contig11615, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53120

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1595--1637
22
2.0
22
95
0
77
11
11
25
51
1.72
4414--4464
25
2.1
25
92
7
88
47
19
15
17
1.83
4651--4677
2
13.5
2
100
0
54
48
0
0
51
1.00
15722--15794
33
2.2
32
92
2
119
27
15
9
47
1.76
17349--17383
12
2.9
12
86
0
52
54
11
17
17
1.71
20133--20165
12
2.8
12
95
0
57
60
9
18
12
1.57
23175--23234
21
3.0
21
73
7
70
38
8
20
33
1.82
28471--28541
3
24.0
3
94
2
108
29
0
4
66
1.11
30292--30326
15
2.2
17
90
10
56
28
11
5
54
1.59
31544--31579
16
2.2
16
90
0
54
30
38
5
25
1.78
32682--32724
17
2.6
16
78
10
50
27
20
0
51
1.48
36110--36188
20
3.8
22
79
14
78
58
6
17
17
1.59
36096--36244
22
7.0
22
74
12
71
53
5
21
20
1.65
36326--36403
22
3.5
21
75
14
75
57
6
12
23
1.58
36444--36598
29
5.2
30
68
17
83
57
2
21
18
1.52
36464--36523
29
2.1
28
87
6
86
58
3
18
20
1.53
36452--36584
66
2.0
66
88
2
196
56
2
21
19
1.53
36518--36598
27
3.0
26
74
15
83
54
2
23
19
1.56
36633--36696
26
2.5
26
89
0
101
51
4
20
23
1.66
40240--40359
63
1.9
63
89
0
186
21
9
25
43
1.82
44026--44067
10
3.8
12
76
23
56
23
4
4
66
1.30
44025--44068
20
2.1
22
91
8
74
25
4
4
65
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44036--44075
20
2.0
20
90
0
62
17
5
10
67
1.37
45605--45642
6
6.5
6
87
3
51
31
0
7
60
1.25
45605--45642
18
2.2
17
95
4
67
31
0
7
60
1.25
49115--49271
62
2.5
62
81
2
190
31
14
24
29
1.95
49184--49361
63
2.8
64
75
5
157
36
14
22
26
1.93
49422--49546
49
2.5
48
85
2
160
32
14
32
20
1.93
52390--52421
13
2.5
13
95
5
57
40
6
15
37
1.73

Tables:   1

The End!