genome.fa.s11595.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011595.1 Corchorus capsularis cultivar CVL-1 contig11616, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62986

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2282--2325	22	2.0	23	86	4	63	31	0	11	56	1.35
11295--11342	21	2.4	21	82	6	64	50	22	4	22	1.67
21846--21941	51	1.9	51	86	2	140	26	8	27	38	1.84
24970--25065	51	1.9	51	89	6	151	26	9	25	39	1.85
27389--27436	25	1.9	25	100	0	96	47	2	16	33	1.58
28120--28339	109	2.0	109	100	0	440	31	12	10	45	1.75
29164--29299	67	2.0	67	100	0	272	25	20	10	44	1.83
29656--29685	12	2.5	12	100	0	60	26	0	26	46	1.53
33037--33070	16	2.1	16	89	10	52	23	17	5	52	1.66
36286--36854	222	2.6	222	89	3	851	40	25	8	25	1.84
37737--37840	42	2.5	42	85	3	129	25	39	29	5	1.79
41359--41468	33	3.3	33	78	5	132	24	10	21	43	1.83
41412--41479	33	2.1	33	85	0	91	26	8	20	44	1.81
41487--41564	33	2.4	33	93	2	131	28	7	17	46	1.76
43406--43496	30	3.2	29	72	23	86	28	34	30	6	1.83
43433--43472	12	3.3	12	96	0	71	32	27	32	7	1.85
46326--46384	30	2.0	30	83	6	75	27	27	15	30	1.96
46795--46899	33	3.2	32	77	9	95	44	21	5	27	1.75
49627--49705	32	2.5	32	91	0	122	31	17	16	34	1.93
54364--54428	31	2.1	31	88	5	96	20	20	26	33	1.96
57242--57293	10	4.9	10	73	13	50	5	23	48	23	1.72
57239--57301	33	1.9	33	100	0	126	7	25	44	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57243--57317	33	2.3	33	90	4	116	6	25	46	21	1.75
59825--59919	36	2.7	35	88	1	127	58	10	10	20	1.60
60658--60733	22	3.3	21	71	20	62	55	7	21	15	1.66
61358--61929	36	15.8	36	89	1	858	28	17	11	42	1.84
62782--62824	21	2.1	20	87	12	61	23	23	20	32	1.98

Tables:   1

The End!