genome.fa.s11604.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011604.1 Corchorus capsularis cultivar CVL-1 contig11625, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52322

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1475--1582	33	3.3	32	80	7	110	20	37	28	12	1.90
5642--5702	18	3.7	18	68	20	60	29	26	26	18	1.98
5633--5711	31	2.5	31	100	0	158	26	25	26	21	1.99
5763--5789	13	2.1	13	100	0	54	22	29	29	18	1.97
5811--5886	29	2.6	30	91	2	118	35	13	32	18	1.89
8776--8814	20	2.0	20	94	0	69	56	5	0	38	1.22
12678--12710	12	2.8	12	90	4	50	27	3	0	69	1.03
14317--14358	12	3.6	12	87	9	52	40	0	0	59	0.97
14320--14363	18	2.3	20	84	7	56	38	0	0	61	0.96
17799--17827	13	2.2	13	100	0	58	20	10	20	48	1.79
26798--26837	17	2.4	17	91	0	62	22	20	20	37	1.94
27790--27822	17	1.9	17	93	0	57	48	33	12	6	1.65
35639--35773	53	2.6	52	84	4	173	45	9	18	26	1.80
35760--35824	29	2.2	30	88	2	96	58	3	20	18	1.52
35841--35926	35	2.6	34	87	9	115	58	6	18	16	1.60
35966--36066	49	2.1	49	88	7	152	47	6	20	24	1.75
36076--36127	16	3.1	16	70	8	50	53	3	26	15	1.59
36127--36188	15	4.1	15	74	12	56	59	1	25	12	1.43
36076--36221	37	4.2	34	81	16	167	56	2	25	15	1.52
36198--36246	25	2.0	25	95	0	89	59	0	22	18	1.38
36315--36346	17	1.9	17	93	6	57	53	6	28	12	1.62
36336--36561	67	3.3	67	90	0	326	47	4	22	25	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36336--36561	68	3.4	68	90	1	339	47	4	22	25	1.70
42088--42330	44	5.5	44	89	0	362	25	22	22	30	1.99
48912--49046	53	2.5	53	84	2	164	45	11	17	25	1.82
49033--49097	29	2.2	30	88	2	96	58	4	20	16	1.56
49114--49201	35	2.6	34	89	8	128	57	6	20	14	1.60
49224--49284	31	2.0	29	90	6	95	62	3	21	13	1.45
49270--49370	49	2.1	49	88	7	152	47	6	20	24	1.75
49391--49525	37	3.8	35	78	12	143	57	2	26	13	1.48
49409--49452	22	2.0	22	86	4	63	63	2	22	11	1.38
49431--49512	15	5.3	16	71	12	55	58	2	26	12	1.46
49502--49550	25	2.0	25	95	0	89	59	0	22	18	1.38
49663--49757	19	4.9	19	66	20	54	46	5	16	31	1.70
49644--49847	58	3.3	58	79	14	239	48	5	20	25	1.70
49702--49860	68	2.4	68	93	1	266	48	6	21	23	1.73
50665--52061	353	4.0	354	90	3	2198	43	17	14	25	1.86

Tables:   1

The End!