genome.fa.s11605.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011605.1 Corchorus capsularis cultivar CVL-1 contig11626, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43169

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1548--1595	24	2.0	24	91	0	78	18	31	12	37	1.88
7541--7605	30	2.1	31	91	2	105	27	18	4	49	1.67
7547--7613	31	2.2	31	89	5	100	31	14	4	49	1.64
7928--7985	23	2.5	22	78	8	62	41	10	15	32	1.81
7898--8029	22	5.9	22	73	9	88	42	10	13	33	1.79
8114--8252	44	3.2	43	83	6	154	42	10	14	33	1.79
8114--8299	22	8.7	22	69	13	111	40	8	16	33	1.79
8423--8511	45	2.0	45	82	4	108	33	10	15	40	1.81
8392--8561	22	7.7	22	70	6	92	34	10	17	38	1.84
8611--8750	61	2.3	61	92	1	226	42	8	14	34	1.76
8939--8975	15	2.4	16	90	9	67	48	0	5	45	1.25
21380--21415	18	2.0	18	100	0	72	44	11	11	33	1.75
21437--21463	2	13.5	2	100	0	54	51	0	0	48	1.00
22535--22574	20	2.0	21	90	5	64	62	17	0	20	1.33
25039--25084	23	2.0	23	100	0	92	34	4	30	30	1.77
25894--25986	29	3.2	29	67	13	73	32	12	20	34	1.91
26054--26118	31	2.2	31	86	5	89	23	13	18	44	1.85
28012--28056	22	2.0	22	100	0	90	75	4	8	11	1.17
28322--28368	2	23.0	2	86	4	67	48	4	2	44	1.34
30341--30494	55	3.3	44	70	20	125	38	24	11	24	1.89
30341--30519	99	1.9	97	86	8	240	39	24	11	25	1.88
32119--32248	60	2.1	61	94	1	226	46	16	21	15	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38535--38565	15	2.1	15	100	0	62	22	19	25	32	1.97
39627--39743	36	3.4	34	77	17	125	29	17	7	45	1.77
39650--39755	32	3.2	32	77	17	117	29	17	6	46	1.74
39627--39755	68	1.9	68	87	9	192	28	17	6	46	1.74
39759--40480	35	20.5	34	83	6	838	26	21	9	41	1.84
39759--40480	106	6.8	106	84	5	867	26	21	9	41	1.84
39759--40480	141	5.1	140	90	3	1069	26	21	9	41	1.84
41229--41324	36	2.9	32	73	19	97	30	17	7	44	1.76
41333--42438	35	31.5	35	82	6	1278	26	21	9	42	1.83
41333--42429	106	10.4	105	84	6	1280	26	21	9	42	1.83
41313--42429	141	7.9	137	84	7	1291	26	21	9	42	1.83
42070--42197	63	2.0	62	89	4	195	27	23	8	40	1.83
42441--42511	11	6.5	11	73	12	65	22	19	9	47	1.78
42438--42522	22	3.8	23	77	13	63	21	17	10	50	1.76
42516--42548	11	2.8	12	86	9	50	9	18	9	63	1.49

Tables:   1

The End!