Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011608.1 Corchorus capsularis cultivar CVL-1 contig11629, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3386
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29


Found at i:1899 original size:33 final size:32

Alignment explanation


    Indices: 1862--1968  Score: 126
    Period size: 33  Copynumber: 3.2  Consensus size: 32

       1852 CACCAAGCGA

                              *   *           
       1862 TGGCCGGT-TGTGGCCGGACATGTCCATGTCGCG
          1 TGGCCGGTGT-TGGCCGGGCATCTCCA-GTCGCG

                                          *  
       1895 TGGCCGGTGTTGGCCGGGCATCTCCGAGTCACG
          1 TGGCCGGTGTTGGCCGGGCATCTCC-AGTCGCG

                               *            *
       1928 TGGCCGGTGTTGGCCGGGCTTCTCCAAGTCGCA
          1 TGGCCGGTGTTGGCCGGGCATCTCC-AGTCGCG

                    
       1961 TGGCCGGT
          1 TGGCCGGT

       1969 CACTAGTGCT


Statistics
Matches: 65,  Mismatches: 7, Indels: 4
        0.86            0.09        0.05

Matches are distributed among these distances:
  33   63  0.97
  34    2  0.03

ACGTcount: A:0.08, C:0.29, G:0.39, T:0.23


Consensus pattern (32 bp):   
TGGCCGGTGTTGGCCGGGCATCTCCAGTCGCG
Done.