Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011615.1 Corchorus capsularis cultivar CVL-1 contig11636, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2563
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32


Found at i:401 original size:44 final size:43

Alignment explanation


    Indices: 292--433  Score: 185
    Period size: 44  Copynumber: 3.2  Consensus size: 43

        282 CAACTTTGGA

                  *                           * *    *   
        292 AAAACCCTTTTATCAAAACCCTCTTTAAAACCATAATTCTTCTTG
          1 AAAACCATTTTATCAAAA-CCT-TTTAAAACCATGACTCTTTTTG

                 *                                       
        337 AAAAAACATTTTATCAAAACCTTTTGAAAACCATGACTCTTTTTG
          1 -AAAACCATTTTATCAAAACCTTTT-AAAACCATGACTCTTTTTG

                                                 *      
        382 AAAACCATTTTATCAAAACCTTTTAAAAACCATGACTATTTTTG
          1 AAAACCATTTTATCAAAACCTTTT-AAAACCATGACTCTTTTTG

                    
        426 AAAACCAT
          1 AAAACCAT

        434 CGTTGCTCTT


Statistics
Matches: 87,  Mismatches: 8, Indels: 4
        0.88            0.08        0.04

Matches are distributed among these distances:
  44   52  0.60
  45   19  0.22
  46   16  0.18

ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35


Consensus pattern (43 bp):   
AAAACCATTTTATCAAAACCTTTTAAAACCATGACTCTTTTTG
Done.