Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011621.1 Corchorus capsularis cultivar CVL-1 contig11642, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 912

Length: 1521
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30


Found at i:356 original size:109 final size:110

Alignment explanation


    Indices: 154--365  Score: 356
    Period size: 109  Copynumber: 1.9  Consensus size: 110

        144 TAAGGTGCCT

                      *                                                      
        154 TGCATACTCTGTAATTTTAGGTCATGACTGACGCGAAGGTTGATATTTGTGATACCGAACCCCGT
          1 TGCATACTCTATAATTTTAGGTCATGACTGACGCGAAGGTTGATATTTGTGATACCGAACCCCGT

                      *                                  
        219 GTACTCCACTTCCCAAAAACAGCGGAGTAATTTATTAAGATGCTC
         66 GTACTCCACTCCCCAAAAACAGCGGAGTAATTTATTAAGATGCTC

                                    *                                        
        264 TGCATACTC-ATAATTTT-GGTTCGTGACTGACGCGAAGGTTGATATTTGTGATACCGAACCCCG
          1 TGCATACTCTATAATTTTAGG-TCATGACTGACGCGAAGGTTGATATTTGTGATACCGAACCCCG

               *                          *        
        327 TGTGCTCCACTCCCCAAAAACAGCGGAGTAGTTTATTAA
         65 TGTACTCCACTCCCCAAAAACAGCGGAGTAATTTATTAA

        366 ATTCCTCTTT


Statistics
Matches: 96,  Mismatches: 5, Indels: 3
        0.92            0.05        0.03

Matches are distributed among these distances:
 108    2  0.02
 109   85  0.89
 110    9  0.09

ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30


Consensus pattern (110 bp):   
TGCATACTCTATAATTTTAGGTCATGACTGACGCGAAGGTTGATATTTGTGATACCGAACCCCGT
GTACTCCACTCCCCAAAAACAGCGGAGTAATTTATTAAGATGCTC
Done.