Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011622.1 Corchorus capsularis cultivar CVL-1 contig11643, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 65932
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Found at i:239 original size:23 final size:22
Alignment explanation
Indices: 196--239 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
186 TGTTTTTTTT
*
196 TAGAAACCTTGAGGTTTCAAAC
1 TAGAAACCTTCAGGTTTCAAAC
*
218 TAGAAACCTTCACTGTTTCAAA
1 TAGAAACCTTCA-GGTTTCAAA
240 AAGTGAGTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (22 bp):
TAGAAACCTTCAGGTTTCAAAC
Found at i:3065 original size:21 final size:21
Alignment explanation
Indices: 3027--3066 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
3017 AAGTTGTTGA
** *
3027 AACTTGAAACGGTTGGGTTCC
1 AACTTGAAACCCTGGGGTTCC
3048 AACTTGAAACCCTGGGGTT
1 AACTTGAAACCCTGGGGTT
3067 TCAAAATCGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (21 bp):
AACTTGAAACCCTGGGGTTCC
Found at i:3134 original size:21 final size:21
Alignment explanation
Indices: 3110--3149 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
3100 CTTGTAAAAG
3110 CTTGAAACCTTGGGGTTTCAA
1 CTTGAAACCTTGGGGTTTCAA
3131 CTTGAAACCTTGGGGTTTC
1 CTTGAAACCTTGGGGTTTC
3150 TTTATCCTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.20, G:0.25, T:0.35
Consensus pattern (21 bp):
CTTGAAACCTTGGGGTTTCAA
Found at i:7903 original size:2 final size:2
Alignment explanation
Indices: 7896--7925 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7886 ACCCCACCAG
7896 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7926 AGGTTTTACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:20860 original size:69 final size:69
Alignment explanation
Indices: 20749--20887 Score: 244
Period size: 69 Copynumber: 2.0 Consensus size: 69
20739 TTGCTTGAAA
* *
20749 TGCATTGTCTTTATATGTAATTTTAGCATTTGGATGTAATTAATGGTGTTCCTATCATTTTTTCC
1 TGCATTGTCTTTATATGTAATTTTAGCATTTGGATGTAATTAATGGTGTTCCCACCATTTTTTCC
20814 TTAG
66 TTAG
20818 TGCATTGTCTTTATATGTAATTTTAGCA-TTGAGATGTAATTAATGGTGTTCCCACCATTTTTTC
1 TGCATTGTCTTTATATGTAATTTTAGCATTTG-GATGTAATTAATGGTGTTCCCACCATTTTTTC
20882 CTTAG
65 CTTAG
20887 T
1 T
20888 TGTTAGTTTT
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
68 3 0.04
69 64 0.96
ACGTcount: A:0.22, C:0.13, G:0.16, T:0.49
Consensus pattern (69 bp):
TGCATTGTCTTTATATGTAATTTTAGCATTTGGATGTAATTAATGGTGTTCCCACCATTTTTTCC
TTAG
Found at i:22807 original size:22 final size:22
Alignment explanation
Indices: 22778--23006 Score: 123
Period size: 22 Copynumber: 10.5 Consensus size: 22
22768 ATAACCTTAT
*
22778 TCACTATGGAATTTCGATAACC
1 TCACTATGAAATTTCGATAACC
*
22800 TCCCTATGAAAATTT-GATAACC
1 TCACTATG-AAATTTCGATAACC
* * *
22822 AT-ACTGTGAAATTTTGGTAACC
1 -TCACTATGAAATTTCGATAACC
*
22844 ACACTATGAAATTTCGATAACC
1 TCACTATGAAATTTCGATAACC
* * * *
22866 TCAGTGTGAAATTTTGATAATC
1 TCACTATGAAATTTCGATAACC
* ** *
22888 TGC-CTATAAAATTTTAATAATC
1 T-CACTATGAAATTTCGATAACC
* * * *
22910 ACAATAAAT-AAAATT-GGTAACC
1 TCACT--ATGAAATTTCGATAACC
* * *
22932 GCACTATGAAAATTTTGATAACG
1 TCACTATG-AAATTTCGATAACC
*
22955 T--C-ATGAAATTTTGATAACC
1 TCACTATGAAATTTCGATAACC
* *
22974 ACACCATGAAATTTCGATAACC
1 TCACTATGAAATTTCGATAACC
*
22996 TCCCTATGAAA
1 TCACTATGAAA
23007 ATGAAACTGT
Statistics
Matches: 157, Mismatches: 36, Indels: 28
0.71 0.16 0.13
Matches are distributed among these distances:
19 13 0.08
20 5 0.03
21 9 0.06
22 111 0.71
23 17 0.11
24 2 0.01
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (22 bp):
TCACTATGAAATTTCGATAACC
Found at i:22851 original size:44 final size:45
Alignment explanation
Indices: 22738--22885 Score: 151
Period size: 44 Copynumber: 3.3 Consensus size: 45
22728 CTCCAATGTA
* * *
22738 GAAA-TTTGATAACCACATTTTGAAAATTTGATAACCTTATTCACTAT
1 GAAATTTTGATAACCACACTATGAAAATTTGATAACC--A-TCACTGT
* * * *
22785 GGAATTTCGATAACCTCCCTATGAAAATTTGATAACCAT-ACTGT
1 GAAATTTTGATAACCACACTATGAAAATTTGATAACCATCACTGT
* *
22829 GAAATTTTGGTAACCACACTATG-AAATTTCGATAACC-TCAGTGT
1 GAAATTTTGATAACCACACTATGAAAATTT-GATAACCATCACTGT
22873 GAAATTTTGATAA
1 GAAATTTTGATAA
22886 TCTGCCTATA
Statistics
Matches: 84, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
43 7 0.08
44 45 0.54
45 1 0.01
46 1 0.01
47 3 0.04
48 27 0.32
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.34
Consensus pattern (45 bp):
GAAATTTTGATAACCACACTATGAAAATTTGATAACCATCACTGT
Found at i:22900 original size:44 final size:42
Alignment explanation
Indices: 22760--22901 Score: 106
Period size: 44 Copynumber: 3.2 Consensus size: 42
22750 CCACATTTTG
* * * *
22760 AAAATTTGATAACCTTATTCACTATGGAATTTCGATAACCTCCCTAT
1 AAAATTTGATAACC--A-T-ACTGTGAAATTTTGATAA-CTACCTAT
* *
22807 GAAAATTTGATAACCATACTGTGAAATTTTGGTAACCACACTAT
1 -AAAATTTGATAACCATACTGTGAAATTTTGATAACTAC-CTAT
* * *
22851 GAAATTTCGATAACC-TCAGTGTGAAATTTTGATAATCTGCCTAT
1 AAAATTT-GATAACCAT-ACTGTGAAATTTTGATAA-CTACCTAT
22895 AAAATTT
1 AAAATTT
22902 TAATAATCAC
Statistics
Matches: 78, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
43 9 0.12
44 51 0.65
45 3 0.04
46 1 0.01
48 14 0.18
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (42 bp):
AAAATTTGATAACCATACTGTGAAATTTTGATAACTACCTAT
Found at i:22900 original size:66 final size:65
Alignment explanation
Indices: 22779--23006 Score: 205
Period size: 66 Copynumber: 3.5 Consensus size: 65
22769 TAACCTTATT
* * * * *
22779 CACTATGGAATTTCGATAACCTCCCTATGAAAATTTGATAACCAT-ACTGTGAAATTTTGGTAAC
1 CACTATGAAATTTCGATAACCTCACTATGAAATTTTGATAA-C-TGACTATGAAATTTTGATAAC
22843 CA
64 CA
* * * * * *
22845 CACTATGAAATTTCGATAACCTCAGTGTGAAATTTTGATAATCTGCCTATAAAATTTTAATAATC
1 CACTATGAAATTTCGATAACCTCACTATGAAATTTTGATAA-CTGACTATGAAATTTTGATAACC
22910 A
65 A
* * * * *
22911 CAATAAAT-AAAATT-GGTAACCGCACTATGAAAATTTTGATAAC-GTC-ATGAAATTTTGATAA
1 CACT--ATGAAATTTCGATAACCTCACTATG-AAATTTTGATAACTGACTATGAAATTTTGATAA
22972 CCA
63 CCA
* *
22975 CACCATGAAATTTCGATAACCTCCCTATGAAA
1 CACTATGAAATTTCGATAACCTCACTATGAAA
23007 ATGAAACTGT
Statistics
Matches: 128, Mismatches: 28, Indels: 15
0.75 0.16 0.09
Matches are distributed among these distances:
62 2 0.02
63 8 0.06
64 29 0.23
65 3 0.02
66 67 0.52
67 17 0.13
68 2 0.02
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.32
Consensus pattern (65 bp):
CACTATGAAATTTCGATAACCTCACTATGAAATTTTGATAACTGACTATGAAATTTTGATAACCA
Found at i:23066 original size:22 final size:24
Alignment explanation
Indices: 23040--23090 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 24
23030 TCTATTTTCG
*
23040 ATAACCTTTCC-ATAAAATTTT-T
1 ATAACCTTCCCGATAAAATTTTGT
23062 ATAACC-TCCCGATAAAATTTTGT
1 ATAACCTTCCCGATAAAATTTTGT
23085 -TAACCT
1 ATAACCT
23091 CCCTAGGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 3 0.12
22 21 0.84
23 1 0.04
ACGTcount: A:0.35, C:0.22, G:0.04, T:0.39
Consensus pattern (24 bp):
ATAACCTTCCCGATAAAATTTTGT
Found at i:23091 original size:22 final size:22
Alignment explanation
Indices: 23051--23093 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
23041 TAACCTTTCC
23051 ATAAAATTTTTATAACCTCCCG
1 ATAAAATTTTTATAACCTCCCG
23073 ATAAAATTTTGT-TAACCTCCC
1 ATAAAATTTT-TATAACCTCCC
23094 TAGGAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.37
Consensus pattern (22 bp):
ATAAAATTTTTATAACCTCCCG
Found at i:23101 original size:22 final size:23
Alignment explanation
Indices: 23053--23109 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
23043 ACCTTTCCAT
*
23053 AAAATTTT-TATAACCTCCCGAT
1 AAAATTTTGTATAACCTCCCGAG
*
23075 AAAATTTTGT-TAACCTCCCTAG
1 AAAATTTTGTATAACCTCCCGAG
*
23097 GAAATTTTG-ATAA
1 AAAATTTTGTATAA
23110 GCACAAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 29 0.97
23 1 0.03
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.37
Consensus pattern (23 bp):
AAAATTTTGTATAACCTCCCGAG
Found at i:23206 original size:44 final size:44
Alignment explanation
Indices: 23157--23283 Score: 132
Period size: 44 Copynumber: 2.9 Consensus size: 44
23147 GTTAAGTTTC
* * *
23157 ATATGAAATTTT-ATTAACATC-CCTAAGAAATTTTGGTAACCTTT
1 ATATGAAATTTTGA-TAACAACACC-AAGAAATTTTGATAACCTCT
* * *
23201 TTATGAAATTTTGATAACAACACCATGAAGTTTTGATAACCTCT
1 ATATGAAATTTTGATAACAACACCAAGAAATTTTGATAACCTCT
* * * *
23245 ATATGAAATTTTGGTAACCACACTATGAAATTTTGATAA
1 ATATGAAATTTTGATAACAACACCAAGAAATTTTGATAA
23284 TTTTTCTATG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
44 67 0.96
45 3 0.04
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (44 bp):
ATATGAAATTTTGATAACAACACCAAGAAATTTTGATAACCTCT
Found at i:23208 original size:22 final size:22
Alignment explanation
Indices: 23157--23283 Score: 89
Period size: 22 Copynumber: 5.8 Consensus size: 22
23147 GTTAAGTTTC
* *
23157 ATATGAAATTTT-ATTAACATCC
1 ATATGAAATTTTGA-TAACCTCT
* * * *
23179 CTAAGAAATTTTGGTAACCTTT
1 ATATGAAATTTTGATAACCTCT
* **
23201 TTATGAAATTTTGATAACAAC-
1 ATATGAAATTTTGATAACCTCT
* *
23222 ACCATGAAGTTTTGATAACCTCT
1 A-TATGAAATTTTGATAACCTCT
* *
23245 ATATGAAATTTTGGTAACCAC-
1 ATATGAAATTTTGATAACCTCT
23266 ACTATGAAATTTTGATAA
1 A-TATGAAATTTTGATAA
23284 TTTTTCTATG
Statistics
Matches: 79, Mismatches: 22, Indels: 8
0.72 0.20 0.07
Matches are distributed among these distances:
21 1 0.01
22 77 0.97
23 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.11, T:0.38
Consensus pattern (22 bp):
ATATGAAATTTTGATAACCTCT
Found at i:23229 original size:66 final size:66
Alignment explanation
Indices: 23159--23283 Score: 153
Period size: 66 Copynumber: 1.9 Consensus size: 66
23149 TAAGTTTCAT
* ****
23159 ATGAAATTTT-ATTAACATCCCTAAGAAATTTTGGTAACCTTTTTATGAAATTTTGATAACAACA
1 ATGAAATTTTGA-TAACATCCATAAGAAATTTTGGTAACCACACTATGAAATTTTGATAACAACA
23223 CC
65 CC
* * * *
23225 ATGAAGTTTTGATAACCTCTATATGAAATTTTGGTAACCACACTATGAAATTTTGATAA
1 ATGAAATTTTGATAACATCCATAAGAAATTTTGGTAACCACACTATGAAATTTTGATAA
23284 TTTTTCTATG
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
66 48 0.98
67 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.11, T:0.38
Consensus pattern (66 bp):
ATGAAATTTTGATAACATCCATAAGAAATTTTGGTAACCACACTATGAAATTTTGATAACAACAC
C
Found at i:26646 original size:16 final size:18
Alignment explanation
Indices: 26606--26651 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
26596 GTACCATTTG
26606 AATTTCAATTTAAGTATCA
1 AATTTCAATTTAAGTAT-A
*
26625 AATTTCAATTTCA-TAT-
1 AATTTCAATTTAAGTATA
26641 AATTTCAATTT
1 AATTTCAATTT
26652 TTAAATTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
16 11 0.42
18 3 0.12
19 12 0.46
ACGTcount: A:0.39, C:0.11, G:0.02, T:0.48
Consensus pattern (18 bp):
AATTTCAATTTAAGTATA
Found at i:28926 original size:16 final size:16
Alignment explanation
Indices: 28905--28935 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
28895 TTCTTCTCCA
28905 TATTCTATTGTCTTTC
1 TATTCTATTGTCTTTC
*
28921 TATTCTCTTGTCTTT
1 TATTCTATTGTCTTT
28936 TCCATACTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.19, G:0.06, T:0.65
Consensus pattern (16 bp):
TATTCTATTGTCTTTC
Found at i:29209 original size:2 final size:2
Alignment explanation
Indices: 29202--29226 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
29192 AATTACTAGC
29202 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
29227 GCTGGTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:33254 original size:22 final size:23
Alignment explanation
Indices: 33229--33273 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
33219 ATTTTGACAG
*
33229 TACAATTTTTAGAAC-TAAAAAT
1 TACAATATTTAGAACTTAAAAAT
33251 TACAATATTTAGAACTTAAAAAT
1 TACAATATTTAGAACTTAAAAAT
33274 AAGTTGTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (23 bp):
TACAATATTTAGAACTTAAAAAT
Found at i:34985 original size:17 final size:18
Alignment explanation
Indices: 34952--34985 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
34942 TACCTTCAGC
34952 CTTGGCACAATCAAGAAA
1 CTTGGCACAATCAAGAAA
*
34970 CTTGGC-CAATCTAGAA
1 CTTGGCACAATCAAGAA
34986 TTGGAGCTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.21
Consensus pattern (18 bp):
CTTGGCACAATCAAGAAA
Found at i:45817 original size:23 final size:23
Alignment explanation
Indices: 45783--45857 Score: 80
Period size: 23 Copynumber: 3.3 Consensus size: 23
45773 TTCCTCCGTA
45783 TTTTTAGG-ACTCCTCTGTGAGAG
1 TTTTT-GGAACTCCTCTGTGAGAG
* *
45806 TTTTTTGAACTCCGCTGTGAGAG
1 TTTTTGGAACTCCTCTGTGAGAG
* * *
45829 TGTTTGGTACTCCTTTGTGAGAG
1 TTTTTGGAACTCCTCTGTGAGAG
*
45852 CTTTTG
1 TTTTTG
45858 TATTATCTTT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
22 1 0.02
23 41 0.98
ACGTcount: A:0.15, C:0.16, G:0.27, T:0.43
Consensus pattern (23 bp):
TTTTTGGAACTCCTCTGTGAGAG
Found at i:51839 original size:30 final size:30
Alignment explanation
Indices: 51803--51860 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
51793 GAAGCAAAAG
**
51803 GGCATTAATCCTATTTATTTTTTTTAAGAA
1 GGCATTAATCCTATTTATTGATTTTAAGAA
51833 GGCATTAATCCTATTTATTGATTTTAAG
1 GGCATTAATCCTATTTATTGATTTTAAG
51861 CTATCACCGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.48
Consensus pattern (30 bp):
GGCATTAATCCTATTTATTGATTTTAAGAA
Found at i:55568 original size:48 final size:48
Alignment explanation
Indices: 55497--55591 Score: 181
Period size: 48 Copynumber: 2.0 Consensus size: 48
55487 GCATAGAGGT
55497 CAAATTATGGGCTATTACACAAGGCTTCGTCGTAGCTAAGGTGAATGC
1 CAAATTATGGGCTATTACACAAGGCTTCGTCGTAGCTAAGGTGAATGC
*
55545 CAAATTATGGGCTATTAGACAAGGCTTCGTCGTAGCTAAGGTGAATG
1 CAAATTATGGGCTATTACACAAGGCTTCGTCGTAGCTAAGGTGAATG
55592 GGTGTGCGGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (48 bp):
CAAATTATGGGCTATTACACAAGGCTTCGTCGTAGCTAAGGTGAATGC
Found at i:56394 original size:14 final size:14
Alignment explanation
Indices: 56375--56408 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
56365 ACAATTTTAG
56375 AACATTTAT-TATAT
1 AACATTTATGT-TAT
56389 AACATTTATGTTAT
1 AACATTTATGTTAT
56403 AACATT
1 AACATT
56409 GAATTTATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 18 0.95
15 1 0.05
ACGTcount: A:0.41, C:0.09, G:0.03, T:0.47
Consensus pattern (14 bp):
AACATTTATGTTAT
Found at i:59672 original size:30 final size:31
Alignment explanation
Indices: 59636--59700 Score: 105
Period size: 30 Copynumber: 2.1 Consensus size: 31
59626 TGGCAATTTA
*
59636 GAAATATATTTTTAAAAAA-AGGCATAATTG
1 GAAATATATTTTTAAAAAAGAGGCATAATCG
*
59666 GAAATATATTTTTAAAAAAGAGGTATAATCG
1 GAAATATATTTTTAAAAAAGAGGCATAATCG
59697 GAAA
1 GAAA
59701 ACATAAAGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 19 0.59
31 13 0.41
ACGTcount: A:0.51, C:0.03, G:0.15, T:0.31
Consensus pattern (31 bp):
GAAATATATTTTTAAAAAAGAGGCATAATCG
Done.