Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011625.1 Corchorus capsularis cultivar CVL-1 contig11646, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3578
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31


Found at i:604 original size:33 final size:33

Alignment explanation


    Indices: 528--651  Score: 144
    Period size: 33  Copynumber: 3.7  Consensus size: 33

        518 TAGACAAAGG

                                   *    *     
        528 GTCGCGTGGCCGGTTGTGGCCGGGCATGGCCGA-
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCC-AT

                **           *               
        561 GTCGTTTGGCCGGTTGTAGCCGGACATGTCCAT
          1 GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT

                 *                            
        594 GTCGCATGGCCGG-TGATGGCCGGACATGTCCAT
          1 GTCGCGTGGCCGGTTG-TGGCCGGACATGTCCAT

                                     
        627 GTCGCGTGGCCGGTCTTGTGGCCGG
          1 GTCGCGTGGCCGG--TTGTGGCCGG

        652 TGTTGCGCGG


Statistics
Matches: 77,  Mismatches: 9, Indels: 8
        0.82            0.10        0.09

Matches are distributed among these distances:
  32    3  0.04
  33   65  0.84
  35    7  0.09
  36    2  0.03

ACGTcount: A:0.09, C:0.27, G:0.41, T:0.23


Consensus pattern (33 bp):   
GTCGCGTGGCCGGTTGTGGCCGGACATGTCCAT
Done.