genome.fa.s11633.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011633.1 Corchorus capsularis cultivar CVL-1 contig11654, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55417

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620--680	27	2.2	27	91	2	95	57	14	8	19	1.62
3561--3788	125	1.8	125	81	7	284	50	17	6	26	1.70
4399--4474	39	1.9	40	86	7	111	53	9	11	25	1.66
5063--5088	13	2.0	13	100	0	52	15	0	0	84	0.62
13448--13484	18	2.1	18	100	0	74	24	5	16	54	1.63
15289--15330	21	2.0	21	90	4	68	35	30	0	33	1.58
21892--22060	31	5.6	31	69	13	127	33	16	18	30	1.94
21896--22059	60	2.7	60	90	1	249	34	16	18	30	1.93
22098--22201	31	3.4	30	72	15	88	28	17	15	38	1.90
22104--22238	60	2.2	60	89	0	198	30	16	14	39	1.88
22123--22229	29	3.6	28	72	14	90	30	18	14	35	1.92
28568--28607	21	1.9	21	94	0	71	35	25	20	20	1.96
28566--28613	21	2.3	21	85	0	69	35	22	18	22	1.96
28606--28657	21	2.5	21	83	0	68	46	9	23	21	1.80
33550--33588	19	2.1	18	85	4	51	30	20	5	43	1.73
41553--41579	14	1.9	14	100	0	54	44	7	3	44	1.49
42299--42329	14	2.2	14	94	0	53	38	3	12	45	1.59
46113--46137	1	25.0	1	100	0	50	0	0	0	100	0.00
50276--50324	10	4.6	12	76	23	56	53	8	0	38	1.31
50270--50328	30	2.0	30	100	0	118	54	10	0	35	1.34
50293--50362	20	3.5	20	67	18	65	50	12	2	34	1.56
51270--51439	22	7.8	22	70	9	98	34	13	10	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51360--51486	22	5.6	22	73	14	89	37	16	11	34	1.85
51650--51863	22	9.7	22	70	8	121	35	16	10	36	1.83
51167--52270	377	3.0	376	93	2	1830	34	15	11	37	1.84
51966--52009	22	2.0	22	86	8	63	40	15	4	38	1.68
52031--52176	22	6.7	22	64	9	66	34	14	10	41	1.80
52298--52355	23	2.5	23	91	0	89	41	13	6	37	1.72
52343--52410	35	1.9	35	85	5	93	36	8	8	45	1.67
52379--52451	22	3.3	21	74	14	58	32	13	8	45	1.73
52689--52747	31	1.9	31	96	0	109	49	3	18	28	1.64
52689--52754	31	2.1	31	91	0	105	50	4	19	25	1.67
54943--54993	22	2.5	21	81	12	61	50	3	13	31	1.60

Tables:   1

The End!