Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011636.1 Corchorus capsularis cultivar CVL-1 contig11657, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50443

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
712--736
12
2.1
12
100
0
50
48
0
16
36
1.46
2414--2747
168
2.0
168
98
0
641
43
17
11
26
1.84
9872--9914
10
4.4
10
80
13
54
79
2
0
18
0.85
9975--10020
15
3.3
15
74
22
55
34
2
10
52
1.49
10394--10432
18
2.2
18
86
9
53
46
0
2
51
1.14
10419--10464
22
2.1
22
91
0
74
47
2
4
45
1.34
17635--18158
35
15.1
35
93
1
849
31
17
10
40
1.83
18616--18911
51
5.8
50
81
6
303
39
14
3
42
1.61
18633--19003
150
2.4
154
81
7
384
40
14
3
41
1.62
21856--21923
26
2.5
28
77
15
72
44
26
10
19
1.82
36483--36511
2
14.5
2
100
0
58
48
0
0
51
1.00
37044--37136
47
2.0
48
93
6
163
36
13
4
45
1.64
46331--46953
70
8.8
70
86
3
847
36
21
19
22
1.95
46333--46953
141
4.4
141
88
2
897
36
21
19
22
1.95
46942--47012
35
2.0
35
88
0
106
38
25
21
15
1.92
48131--48206
21
3.5
21
72
19
59
2
21
1
75
1.00
48888--48999
44
2.5
45
85
5
147
40
22
4
33
1.74
49389--49418
2
15.5
2
93
6
53
53
0
0
46
1.00
49388--49419
15
2.1
15
100
0
64
56
0
0
43
0.99
49391--49416
13
2.0
13
100
0
52
53
0
0
46
1.00

Tables:   1

The End!