Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01011638.1 Corchorus capsularis cultivar CVL-1 contig11659, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64560
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Found at i:324 original size:39 final size:38
Alignment explanation
Indices: 281--398 Score: 86
Period size: 39 Copynumber: 3.1 Consensus size: 38
271 CCGTCGGCTA
281 GGTCGCGTCCGACCCTGGGTCGCGCGCGATCTAGCCGGC
1 GGTCGCGTCCGACCCTGGGTCGCGCGCG-TCTAGCCGGC
* * * *
320 GGTCG-GTCACGA--CTTGATCGCG-AC-T-TACCGTCGGC
1 GGTCGCGTC-CGACCCTGGGTCGCGCGCGTCTA--GCCGGC
*
355 TGGGTCGCGTCCGACCCTGGGTCGCGCGCGGCCTAGCCGGC
1 --GGTCGCGTCCGACCCTGGGTCGCGCGC-GTCTAGCCGGC
396 GGT
1 GGT
399 GGGTCGCTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 24
0.64 0.10 0.26
Matches are distributed among these distances:
33 2 0.03
34 1 0.02
35 5 0.09
36 1 0.02
37 16 0.28
38 6 0.10
39 19 0.33
40 1 0.02
41 5 0.09
43 2 0.03
ACGTcount: A:0.08, C:0.36, G:0.38, T:0.18
Consensus pattern (38 bp):
GGTCGCGTCCGACCCTGGGTCGCGCGCGTCTAGCCGGC
Found at i:342 original size:76 final size:76
Alignment explanation
Indices: 204--403 Score: 294
Period size: 76 Copynumber: 2.6 Consensus size: 76
194 CACCGAGGTT
* * * * * *
204 TAGGTCGCGACCGACCCCGGGTCGCGAGC-AACGAGCCGGCGGTGGGGCGCGACTTGATCGCGAC
1 TAGGTCGCGTCCGACCCTGGGTCGCGCGCGAACTAGCCGGCGGTGGGTCACGACTTGATCGCGAC
268 TTACCGTCGGC
66 TTACCGTCGGC
* *
279 TAGGTCGCGTCCGACCCTGGGTCGCGCGCGATCTAGCCGGCGGTCGGTCACGACTTGATCGCGAC
1 TAGGTCGCGTCCGACCCTGGGTCGCGCGCGAACTAGCCGGCGGTGGGTCACGACTTGATCGCGAC
344 TTACCGTCGGC
66 TTACCGTCGGC
* **
355 TGGGTCGCGTCCGACCCTGGGTCGCGCGCGGCCTAGCCGGCGGTGGGTC
1 TAGGTCGCGTCCGACCCTGGGTCGCGCGCGAACTAGCCGGCGGTGGGTC
404 GCTACCGCCG
Statistics
Matches: 112, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
75 26 0.23
76 86 0.77
ACGTcount: A:0.11, C:0.34, G:0.39, T:0.17
Consensus pattern (76 bp):
TAGGTCGCGTCCGACCCTGGGTCGCGCGCGAACTAGCCGGCGGTGGGTCACGACTTGATCGCGAC
TTACCGTCGGC
Found at i:535 original size:16 final size:17
Alignment explanation
Indices: 505--536 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
495 GAGAAATCCT
505 TTGCCCCTCCCATGATG
1 TTGCCCCTCCCATGATG
522 TTGCCCCT-CCATGAT
1 TTGCCCCTCCCATGAT
537 TGTAGATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.12, C:0.41, G:0.16, T:0.31
Consensus pattern (17 bp):
TTGCCCCTCCCATGATG
Found at i:668 original size:20 final size:20
Alignment explanation
Indices: 643--682 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
633 ATGTCTTTTG
643 GGGGGCGGTACCTAGTAAAA
1 GGGGGCGGTACCTAGTAAAA
**
663 GGGGGCGGTATTTAGTAAAA
1 GGGGGCGGTACCTAGTAAAA
683 CCCTAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.40, T:0.20
Consensus pattern (20 bp):
GGGGGCGGTACCTAGTAAAA
Found at i:6390 original size:17 final size:16
Alignment explanation
Indices: 6370--6418 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
6360 TTTCGTTATT
*
6370 TTTCTTTTAATTTTTTG
1 TTTCTTTT-ATTTTTAG
*
6387 TTTCTTTTGTTTTTAG
1 TTTCTTTTATTTTTAG
6403 TTTACTTTTTATTTTT
1 TTT-C-TTTTATTTTT
6419 CTTAGTTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 9 0.33
17 9 0.33
18 9 0.33
ACGTcount: A:0.10, C:0.06, G:0.06, T:0.78
Consensus pattern (16 bp):
TTTCTTTTATTTTTAG
Found at i:6394 original size:22 final size:23
Alignment explanation
Indices: 6337--6399 Score: 69
Period size: 22 Copynumber: 2.8 Consensus size: 23
6327 TACCTAAGAA
*
6337 TTTC-TTACCTTTATCTTTTAATT
1 TTTCGTTATCTTT-TCTTTTAATT
6360 TTTCGTTAT-TTTTCTTTTAATT
1 TTTCGTTATCTTTTCTTTTAATT
* *
6382 TTTTGTT-TCTTTTGTTTT
1 TTTCGTTATCTTTTCTTTT
6400 TAGTTTACTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
21 1 0.03
22 24 0.69
23 7 0.20
24 3 0.09
ACGTcount: A:0.11, C:0.11, G:0.05, T:0.73
Consensus pattern (23 bp):
TTTCGTTATCTTTTCTTTTAATT
Found at i:6405 original size:16 final size:17
Alignment explanation
Indices: 6370--6418 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
6360 TTTCGTTATT
*
6370 TTTCTTTTAATTTTTTG
1 TTTCTTTTAATTTTTAG
*
6387 TTTCTTTT-GTTTTTAG
1 TTTCTTTTAATTTTTAG
*
6403 TTTACTTTTTATTTTT
1 TTT-CTTTTAATTTTT
6419 CTTAGTTACT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 9 0.33
17 13 0.48
18 5 0.19
ACGTcount: A:0.10, C:0.06, G:0.06, T:0.78
Consensus pattern (17 bp):
TTTCTTTTAATTTTTAG
Found at i:7587 original size:21 final size:20
Alignment explanation
Indices: 7554--7596 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
7544 CTTTAGGAAT
*
7554 GCAAGAGGGATTTCAAAAGAA
1 GCAAGAGGCATTTC-AAAGAA
* *
7575 GCAAGAGTCATTTCCAAGAA
1 GCAAGAGGCATTTCAAAGAA
7595 GC
1 GC
7597 TACAACTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.42, C:0.16, G:0.26, T:0.16
Consensus pattern (20 bp):
GCAAGAGGCATTTCAAAGAA
Found at i:12414 original size:2 final size:2
Alignment explanation
Indices: 12407--12432 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
12397 GGTTAATCTA
12407 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
12433 TATCGGTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12946 original size:3 final size:3
Alignment explanation
Indices: 12938--12969 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
12928 GCCTTATTTG
12938 CTT CTT CTT CTT CTT CTT CTT CTT CTTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT C-TT CTT C
12970 ATTGAAAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
CTT
Found at i:19503 original size:17 final size:17
Alignment explanation
Indices: 19463--19557 Score: 90
Period size: 17 Copynumber: 5.8 Consensus size: 17
19453 TCGAGCCATT
*
19463 TTCGGGTTCGGGTTTAA
1 TTCGGGTTCGGGTTGAA
* *
19480 GTCGGGTTCGGGTTGAT
1 TTCGGGTTCGGGTTGAA
* * *
19497 TTTGGG-TCAGG-TCAA
1 TTCGGGTTCGGGTTGAA
19512 TTCGGGTTCGGGTTGAA
1 TTCGGGTTCGGGTTGAA
* *
19529 TTTGGG-TCAGGTT-AA
1 TTCGGGTTCGGGTTGAA
19544 TTCGGGTTCGGGTT
1 TTCGGGTTCGGGTT
19558 CGGGTTCAGT
Statistics
Matches: 60, Mismatches: 15, Indels: 7
0.73 0.18 0.09
Matches are distributed among these distances:
15 14 0.23
16 20 0.33
17 26 0.43
ACGTcount: A:0.12, C:0.12, G:0.39, T:0.38
Consensus pattern (17 bp):
TTCGGGTTCGGGTTGAA
Found at i:19563 original size:38 final size:32
Alignment explanation
Indices: 19481--19557 Score: 136
Period size: 32 Copynumber: 2.4 Consensus size: 32
19471 CGGGTTTAAG
*
19481 TCGGGTTCGGGTTGATTTTGGGTCAGGTCAAT
1 TCGGGTTCGGGTTGAATTTGGGTCAGGTCAAT
*
19513 TCGGGTTCGGGTTGAATTTGGGTCAGGTTAAT
1 TCGGGTTCGGGTTGAATTTGGGTCAGGTCAAT
19545 TCGGGTTCGGGTT
1 TCGGGTTCGGGTT
19558 CGGGTTCAGT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.12, C:0.12, G:0.39, T:0.38
Consensus pattern (32 bp):
TCGGGTTCGGGTTGAATTTGGGTCAGGTCAAT
Found at i:19571 original size:38 final size:37
Alignment explanation
Indices: 19481--19573 Score: 106
Period size: 32 Copynumber: 2.6 Consensus size: 37
19471 CGGGTTTAAG
*
19481 TCGGGTTCGGGTTGATTTTGGGTCAGGTCAATTCGGGT
1 TCGGGTTCGGGTT-AATTTGGGTCAGGTCAATTCGGGT
*
19519 TCGGGTT---G--AATTTGGGTCAGGTTAATTCGGGT
1 TCGGGTTCGGGTTAATTTGGGTCAGGTCAATTCGGGT
*
19551 TCGGGTTCGGGTTCAGTTTGGGT
1 TCGGGTTCGGGTT-AATTTGGGT
19574 TTTAGCCAGA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
32 29 0.63
35 2 0.04
38 15 0.33
ACGTcount: A:0.11, C:0.12, G:0.40, T:0.38
Consensus pattern (37 bp):
TCGGGTTCGGGTTAATTTGGGTCAGGTCAATTCGGGT
Found at i:19742 original size:16 final size:16
Alignment explanation
Indices: 19718--19769 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
19708 AACTTTTGGA
*
19718 TTCGGGTTCGTGTTTT
1 TTCGAGTTCGTGTTTT
19734 TTCGAGTTC-TGATTTT
1 TTCGAGTTCGTG-TTTT
* *
19750 TTCGAGTTCGAGCTTT
1 TTCGAGTTCGTGTTTT
19766 TTCG
1 TTCG
19770 GCTTCGGGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 2 0.06
16 28 0.90
17 1 0.03
ACGTcount: A:0.08, C:0.15, G:0.25, T:0.52
Consensus pattern (16 bp):
TTCGAGTTCGTGTTTT
Found at i:22851 original size:364 final size:361
Alignment explanation
Indices: 22185--22911 Score: 1346
Period size: 364 Copynumber: 2.0 Consensus size: 361
22175 TTAGCTCTCT
*
22185 ATACTCACGGAATATTCTTAGGAATACTCACCCTTTCAAATTCTTATTGTGGTTTCAGGATAGTT
1 ATACTCACGGAATATTCTTAGGAATACTCACCCTTTCAAATTCTTATTGTAGTTTCAGGATAGTT
22250 AGGACTCAGCGTTTTTTGATAATTGAGTCGGTAGCGTAGGCTGTGATCCTTGTTGATAGAGGTAC
66 AGGACTCAGCGTTTTTTGATAATTGAGTCGGTAGCGTAGGCTGTGATCCTTGTTGATAGAGGTAC
*
22315 TTCTCACTACGATAGGGTCCCACTGGCAGTTGTCTTGTTTCCCATTATCTTTCACACCTCTTTTT
131 TTCTCACTACGATAGAGTCCCACTGGCAGTTGTCTTGTTTCCCATTATCTTTCACACCTCTTTTT
22380 TGTTTTATATTTTATTTTGTTGTTTTCTGTAATTTCGTATGACTTTGATTTTAAATATTGGAGCG
196 TGTTTTATATTTTATTTTGTTGTTTTCTGTAATTTCGTATGACTTTGATTTTAAATATTGGAGCG
* * *
22445 TTTTTATTACAGTATTTGGTTTTTGATGATTTTGCTTTTACTCTGATTTCGAAATTTTAATATTT
261 TTTTCATTACAGTATTTGGTTTTTGACGATTTTGCTTTTACTCTGATTTCGAAATTTCAATATTT
22510 TAAATTTATACTCAATTCATGTTTTCCATGTTTTCG
326 TAAATTTATACTCAATTCATGTTTTCCATGTTTTCG
*
22546 ATACTCACGGAGTATTCTTAGGAATACTCACCCTTTCAAATTCTTATTGTAGTTTCAGGATAGTT
1 ATACTCACGGAATATTCTTAGGAATACTCACCCTTTCAAATTCTTATTGTAGTTTCAGGATAGTT
* *
22611 AGGACTCAGCATTTCTTTTGATAATTGAGTCGGTAGCGTAGGCTGTGATCCTTGTTGATAGGGGT
66 AGGACTCAGC-GTT-TTTTGATAATTGAGTCGGTAGCGTAGGCTGTGATCCTTGTTGATAGAGGT
22676 ACTTCTCACTACGATACGAGTCCCACTGGCAGTTGTCTTGTTTCCCATTATCTTTCACACCTCTT
129 ACTTCTCACTACGATA-GAGTCCCACTGGCAGTTGTCTTGTTTCCCATTATCTTTCACACCTCTT
*
22741 TTTTGTTTTTTATTTTATTTTGTTGTTTTCTGTAATTTCGTATGACTTTGATTTTAAATATTGGA
193 TTTTGTTTTATATTTTATTTTGTTGTTTTCTGTAATTTCGTATGACTTTGATTTTAAATATTGGA
22806 GCGTTTTCATTACAGTATTTGGTTTTTGACGATTTTGCTTTTACTCTGATTTCGAAATTTCAATA
258 GCGTTTTCATTACAGTATTTGGTTTTTGACGATTTTGCTTTTACTCTGATTTCGAAATTTCAATA
22871 TTTTAAATTTATACTCAATTCATGTTTTCCATGTTTTCG
323 TTTTAAATTTATACTCAATTCATGTTTTCCATGTTTTCG
22910 AT
1 AT
22912 CTGGTATTGA
Statistics
Matches: 354, Mismatches: 9, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
361 73 0.21
362 2 0.01
363 65 0.18
364 214 0.60
ACGTcount: A:0.22, C:0.16, G:0.17, T:0.46
Consensus pattern (361 bp):
ATACTCACGGAATATTCTTAGGAATACTCACCCTTTCAAATTCTTATTGTAGTTTCAGGATAGTT
AGGACTCAGCGTTTTTTGATAATTGAGTCGGTAGCGTAGGCTGTGATCCTTGTTGATAGAGGTAC
TTCTCACTACGATAGAGTCCCACTGGCAGTTGTCTTGTTTCCCATTATCTTTCACACCTCTTTTT
TGTTTTATATTTTATTTTGTTGTTTTCTGTAATTTCGTATGACTTTGATTTTAAATATTGGAGCG
TTTTCATTACAGTATTTGGTTTTTGACGATTTTGCTTTTACTCTGATTTCGAAATTTCAATATTT
TAAATTTATACTCAATTCATGTTTTCCATGTTTTCG
Found at i:23524 original size:21 final size:21
Alignment explanation
Indices: 23498--23542 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
23488 ATTAATTCGA
*
23498 TTAAAAATATATCTGAATGTT
1 TTAAAAATATATCTAAATGTT
23519 TTAAAAATATATCTAAATGTT
1 TTAAAAATATATCTAAATGTT
23540 TTA
1 TTA
23543 TCTTTAGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.44
Consensus pattern (21 bp):
TTAAAAATATATCTAAATGTT
Found at i:31463 original size:23 final size:22
Alignment explanation
Indices: 31437--31500 Score: 74
Period size: 25 Copynumber: 2.7 Consensus size: 22
31427 TGTGGTTAAA
31437 AATAAAAAATATAAATTATATAT
1 AATAAAAAATA-AAATTATATAT
31460 AATATTAAAAATAATAATTATATAT
1 AATA--AAAAATAA-AATTATATAT
*
31485 AGACAAAAAATAAAAT
1 A-ATAAAAAATAAAAT
31501 AAAATATTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
23 7 0.19
24 9 0.25
25 18 0.50
26 2 0.06
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (22 bp):
AATAAAAAATAAAATTATATAT
Found at i:31844 original size:86 final size:85
Alignment explanation
Indices: 31667--31830 Score: 258
Period size: 86 Copynumber: 1.9 Consensus size: 85
31657 TCTAATTGTA
* *
31667 TTAATTAAATCTAATCTCTTTATAACTATTTTATCTTTAACATTTTACTATTTTAATTTTAAAAA
1 TTAATTAAATCCAATCTCTTTATAACTATTTTATCTTTAACATTTTACTATTTCAA-TTTAAAAA
31732 ACTTAGATATATTAAAAAATT
65 ACTTAGATATATTAAAAAATT
* * *
31753 TTAATTAAATCCAATCTCTTTATAACTATTTTATTTTTACCATTTTTACTATTTCAA-TTACAAA
1 TTAATTAAATCCAATCTCTTTATAACTATTTTATCTTTAACA-TTTTACTATTTCAATTTAAAAA
31817 ACTTAGATATATTA
65 ACTTAGATATATTA
31831 GAATTTTTTT
Statistics
Matches: 72, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
85 20 0.28
86 39 0.54
87 13 0.18
ACGTcount: A:0.38, C:0.12, G:0.01, T:0.49
Consensus pattern (85 bp):
TTAATTAAATCCAATCTCTTTATAACTATTTTATCTTTAACATTTTACTATTTCAATTTAAAAAA
CTTAGATATATTAAAAAATT
Found at i:33105 original size:15 final size:15
Alignment explanation
Indices: 33059--33108 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
33049 AAATAATATT
33059 TTAATTATTCCATTA
1 TTAATTATTCCATTA
*
33074 TT--TT-TT-AATTA
1 TTAATTATTCCATTA
*
33085 TAAATTATTCCATTA
1 TTAATTATTCCATTA
33100 TTAATTATT
1 TTAATTATT
33109 AGATTATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 8
0.69 0.10 0.21
Matches are distributed among these distances:
11 5 0.19
12 2 0.07
13 4 0.15
14 2 0.07
15 14 0.52
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (15 bp):
TTAATTATTCCATTA
Found at i:33114 original size:15 final size:15
Alignment explanation
Indices: 33059--33120 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
33049 AAATAATATT
*
33059 TTAATTATTCCATTA
1 TTAATTATTACATTA
33074 TT--TT-TTA-ATTA
1 TTAATTATTACATTA
* *
33085 TAAATTATTCCATTA
1 TTAATTATTACATTA
*
33100 TTAATTATTAGATTA
1 TTAATTATTACATTA
33115 TATAAT
1 T-TAAT
33121 ACGTATAATT
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
11 5 0.14
12 2 0.06
13 4 0.11
14 2 0.06
15 19 0.53
16 4 0.11
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (15 bp):
TTAATTATTACATTA
Found at i:33269 original size:19 final size:20
Alignment explanation
Indices: 33242--33279 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
33232 TACTATTAGT
33242 TTTTGAATTT-AATATTTTAC
1 TTTTGAATTTCAAT-TTTTAC
33262 TTTT-AATTTCAATTTTTA
1 TTTTGAATTTCAATTTTTA
33280 AATGTCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (20 bp):
TTTTGAATTTCAATTTTTAC
Found at i:33469 original size:22 final size:22
Alignment explanation
Indices: 33444--33584 Score: 133
Period size: 22 Copynumber: 6.3 Consensus size: 22
33434 TTGTCTCTAT
*
33444 ATGGTTATCAAAATTTCATAAG
1 ATGGTTATCAAAATTTCATAGG
* *
33466 ATGGTTATTATAATTTCATGAGG
1 ATGGTTATCAAAATTTCAT-AGG
*
33489 A-GGTTATCAAAATTCCATAGTG
1 ATGGTTATCAAAATTTCATAG-G
*
33511 -TGGTTACCAAAATTTCATAGG
1 ATGGTTATCAAAATTTCATAGG
* *
33532 ATCAGGTTATTAAAATTTCTTAGG
1 AT--GGTTATCAAAATTTCATAGG
* **
33556 TTGGTTATTGAAATTTCATAGG
1 ATGGTTATCAAAATTTCATAGG
*
33578 GTGGTTA
1 ATGGTTA
33585 ATTTTCACAA
Statistics
Matches: 98, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
21 3 0.03
22 74 0.76
23 3 0.03
24 18 0.18
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.39
Consensus pattern (22 bp):
ATGGTTATCAAAATTTCATAGG
Found at i:33562 original size:68 final size:66
Alignment explanation
Indices: 33445--33584 Score: 165
Period size: 68 Copynumber: 2.1 Consensus size: 66
33435 TGTCTCTATA
* * *
33445 TGGTTATCAAAATTTCATAAGATGGTTATTATAATTTCATGAGGAGGTTATCAAAATTCCATAGT
1 TGGTTACCAAAATTTCATAAGATGGTTATTAAAATTTCATGAGGAGGTTATCAAAATTCCATAGG
33510 G
66 G
* * * ** *
33511 TGGTTACCAAAATTTCATAGGATCAGGTTATTAAAATTTC-TTAGGTTGGTTATTGAAATTTCAT
1 TGGTTACCAAAATTTCATAAGAT--GGTTATTAAAATTTCATGAGG-AGGTTATCAAAATTCCAT
33575 AGGG
63 AGGG
33579 TGGTTA
1 TGGTTA
33585 ATTTTCACAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
66 21 0.34
67 4 0.06
68 37 0.60
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (66 bp):
TGGTTACCAAAATTTCATAAGATGGTTATTAAAATTTCATGAGGAGGTTATCAAAATTCCATAGG
G
Found at i:33687 original size:22 final size:22
Alignment explanation
Indices: 33639--33725 Score: 65
Period size: 22 Copynumber: 4.0 Consensus size: 22
33629 TGTCATAACA
33639 AGGTTATAAGAATTTCATAGTG
1 AGGTTATAAGAATTTCATAGTG
*
33661 TGGTTA-ACAGAATTTCATTAG-G
1 AGGTTATA-AGAATTTCA-TAGTG
* * *
33683 AGGTTACTAA-TATTTCATGGGG
1 AGGTTA-TAAGAATTTCATAGTG
*
33705 AGGTTATCAA-AATTTTATAGT
1 AGGTTAT-AAGAATTTCATAGT
33726 AATTATGATT
Statistics
Matches: 51, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
21 4 0.08
22 42 0.82
23 4 0.08
24 1 0.02
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (22 bp):
AGGTTATAAGAATTTCATAGTG
Found at i:33838 original size:22 final size:22
Alignment explanation
Indices: 33786--33953 Score: 82
Period size: 22 Copynumber: 7.6 Consensus size: 22
33776 TAAGGAGTAC
* *
33786 CAAAATTTGATAGAA-GGTTAT
1 CAAAATTTCATAGAATGATTAT
* *
33807 -TAAATCTCATAGAATGATTAT
1 CAAAATTTCATAGAATGATTAT
* * *
33828 CGAAATTTCATAAAGATCAAATTAT
1 CAAAATTTCATAGA-AT--GATTAT
33853 CAAAATTT-ATAGGAA-GATTAT
1 CAAAATTTCATA-GAATGATTAT
**
33874 CAAAATTTCATAGTGTTG-TTAT
1 CAAAATTTCATAG-AATGATTAT
* * *
33896 CAAAATTTCAAAGCGA-GGTTAT
1 CAAAATTTCATAG-AATGATTAT
*
33918 CAAAATTAT-ATA-ATGTGATTAT
1 CAAAATT-TCATAGA-ATGATTAT
*
33940 CAGAATTTCATAGA
1 CAAAATTTCATAGA
33954 GGGGTCAACA
Statistics
Matches: 111, Mismatches: 21, Indels: 28
0.69 0.13 0.17
Matches are distributed among these distances:
20 11 0.10
21 21 0.19
22 57 0.51
23 5 0.05
24 4 0.04
25 13 0.12
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (22 bp):
CAAAATTTCATAGAATGATTAT
Found at i:33940 original size:44 final size:45
Alignment explanation
Indices: 33848--34031 Score: 152
Period size: 44 Copynumber: 4.2 Consensus size: 45
33838 TAAAGATCAA
* * *
33848 ATTATCAAAATTT-ATAG-GAAGATTATCAAAA-TTTCATAGTGTTG
1 ATTATCAAAATTTCAAAGAG-AGGTTATCAAAATTTTCATAATG-TG
* *
33892 -TTATCAAAATTTCAAAGCGAGGTTATCAAAATTAT-ATAATGTG
1 ATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTTCATAATGTG
* * * * * * *
33935 ATTATCAGAATTTCATAGAGGGGTCAACAAAATTTT-ATAAAGAG
1 ATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTTCATAATGTG
* *
33979 GTTATCAAAATTTCATAA-AGAGGTTATC-AAATTTTCAGAATGTG
1 ATTATCAAAATTTCA-AAGAGAGGTTATCAAAATTTTCATAATGTG
34023 ATTA-CAAAA
1 ATTATCAAAA
34032 ATTTTATAGT
Statistics
Matches: 111, Mismatches: 23, Indels: 13
0.76 0.16 0.09
Matches are distributed among these distances:
43 26 0.23
44 81 0.73
45 4 0.04
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.34
Consensus pattern (45 bp):
ATTATCAAAATTTCAAAGAGAGGTTATCAAAATTTTCATAATGTG
Found at i:33987 original size:22 final size:22
Alignment explanation
Indices: 33849--34015 Score: 128
Period size: 22 Copynumber: 7.6 Consensus size: 22
33839 AAAGATCAAA
33849 TTATCAAAATTT-ATAGGAAGA--
1 TTATCAAAATTTCATA--AAGAGG
** **
33870 TTATCAAAATTTCATAGTGTTG
1 TTATCAAAATTTCATAAAGAGG
*
33892 TTATCAAAATTTCA-AAGCGAGG
1 TTATCAAAATTTCATAA-AGAGG
* * *
33914 TTATCAAAATTAT-ATAATGTGA
1 TTATCAAAATT-TCATAAAGAGG
* * *
33936 TTATCAGAATTTCATAGAGGGG
1 TTATCAAAATTTCATAAAGAGG
* * *
33958 TCAACAAAATTTTATAAAGAGG
1 TTATCAAAATTTCATAAAGAGG
33980 TTATCAAAATTTCATAAAGAGG
1 TTATCAAAATTTCATAAAGAGG
*
34002 TTATCAAATTTTCA
1 TTATCAAAATTTCA
34016 GAATGTGATT
Statistics
Matches: 114, Mismatches: 25, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
20 1 0.01
21 14 0.12
22 96 0.84
23 3 0.03
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.35
Consensus pattern (22 bp):
TTATCAAAATTTCATAAAGAGG
Found at i:34235 original size:22 final size:22
Alignment explanation
Indices: 34121--34657 Score: 224
Period size: 22 Copynumber: 24.6 Consensus size: 22
34111 TTGTGGAGTA
*
34121 ATCAAAATTTC--AGGGAGGAT
1 ATCAAAATTTCATAGGGAGGTT
**
34141 ATCAAAATTTCATAGTTTA-GTT
1 ATCAAAATTTCATAG-GGAGGTT
* **
34163 TTCAAAATTTCATAAAGAGGGTT
1 ATCAAAATTTCATAGGGA-GGTT
* ***
34186 ATCAAAATTTCATA-GTATGCAG
1 ATCAAAATTTCATAGGGA-GGTT
*
34208 ATCAAAATTTCATAGGGAGATT
1 ATCAAAATTTCATAGGGAGGTT
* **
34230 AACAAAATTTCATAATGAGGTT
1 ATCAAAATTTCATAGGGAGGTT
**
34252 ATCAAAAAATCATAGGGAGGTT
1 ATCAAAATTTCATAGGGAGGTT
*
34274 ATCAAAA-TT--T--GTA-GTT
1 ATCAAAATTTCATAGGGAGGTT
* * * *
34290 ATCAAGATTTCATAAGAAAGTT
1 ATCAAAATTTCATAGGGAGGTT
* *
34312 ATCAAAATTTTATAGGGAGCTTT
1 ATCAAAATTTCATAGGGAG-GTT
*
34335 ATCAAAATTTCATAGCGAGGTT
1 ATCAAAATTTCATAGGGAGGTT
* * * *
34357 ATCACAATTTCATAGTGTGATT
1 ATCAAAATTTCATAGGGAGGTT
* * * *
34379 ATCAAAATTTCAGAGTGTGATT
1 ATCAAAATTTCATAGGGAGGTT
* *
34401 A-CTAAAAATTCATATGGAGGTT
1 ATC-AAAATTTCATAGGGAGGTT
* * * * *
34423 TTTAAATTTTCATAACGTA-GTT
1 ATCAAAATTTCAT-AGGGAGGTT
* * **
34445 ATCAATATATCATATAGAGGTT
1 ATCAAAATTTCATAGGGAGGTT
* * ** *
34467 ATCAACATCTCATAGTGTTGGTC
1 ATCAAAATTTCATAG-GGAGGTT
* *
34490 ATCAAAATTTCATTGGGAAGTT
1 ATCAAAATTTCATAGGGAGGTT
**
34512 ATCAAAATTTCATATTGAGGTCT
1 ATCAAAATTTCATAGGGAGGT-T
* * *
34535 -TTAAAATTCCTTAGGGAGGTT
1 ATCAAAATTTCATAGGGAGGTT
* *
34556 AAT-AAAATTTCATAAGAAGGTT
1 -ATCAAAATTTCATAGGGAGGTT
** *** *
34578 AAAAAAAATTT-ATAAAAAGTTT
1 -ATCAAAATTTCATAGGGAGGTT
* * * * **
34600 CTCGAAATTCCATA-GTATCATT
1 ATCAAAATTTCATAGGGA-GGTT
* *
34622 ATTAAAATTTCATAGGAAGGTT
1 ATCAAAATTTCATAGGGAGGTT
34644 ATCAAAATTTCATA
1 ATCAAAATTTCATA
34658 ATGGGATCAT
Statistics
Matches: 379, Mismatches: 113, Indels: 48
0.70 0.21 0.09
Matches are distributed among these distances:
16 9 0.02
17 4 0.01
19 2 0.01
20 11 0.03
21 14 0.04
22 272 0.72
23 67 0.18
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (22 bp):
ATCAAAATTTCATAGGGAGGTT
Found at i:40737 original size:42 final size:42
Alignment explanation
Indices: 40674--40755 Score: 137
Period size: 42 Copynumber: 2.0 Consensus size: 42
40664 TGTTGACACA
**
40674 TACCTCACCTGATAATTAATTATGTATTTAATATTCAAAACC
1 TACCTCACCTGATAAGCAATTATGTATTTAATATTCAAAACC
*
40716 TACCTCACCTTATAAGCAATTATGTATTTAATATTCAAAA
1 TACCTCACCTGATAAGCAATTATGTATTTAATATTCAAAA
40756 TTAATATCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.39, C:0.18, G:0.05, T:0.38
Consensus pattern (42 bp):
TACCTCACCTGATAAGCAATTATGTATTTAATATTCAAAACC
Found at i:41029 original size:31 final size:30
Alignment explanation
Indices: 40977--41076 Score: 105
Period size: 31 Copynumber: 3.2 Consensus size: 30
40967 AACCTGCCCA
* *
40977 ACCCGAGACCCGGTAGACCCAAGAGCCGAATG
1 ACCCGAGACCCAG-AGACCCAA-ACCCGAATG
*
41009 ACCCGAGACCGC-GAGACCCAAAACCCGAATA
1 ACCCGAGACC-CAGAGACCC-AAACCCGAATG
41040 ACCCGA-ACCCAGATGACCCGAAACCCGAATG
1 ACCCGAGACCCAGA-GACCC-AAACCCGAATG
41071 ACCCGA
1 ACCCGA
41077 AAAAACTGCA
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
29 1 0.02
30 5 0.08
31 40 0.67
32 13 0.22
33 1 0.02
ACGTcount: A:0.35, C:0.38, G:0.22, T:0.05
Consensus pattern (30 bp):
ACCCGAGACCCAGAGACCCAAACCCGAATG
Found at i:41071 original size:16 final size:16
Alignment explanation
Indices: 41002--41078 Score: 81
Period size: 15 Copynumber: 4.9 Consensus size: 16
40992 GACCCAAGAG
*
41002 CCGAATGACCCGAGAC
1 CCGAATGACCCGAAAC
*
41018 CGCG-A-GACCCAAAAC
1 C-CGAATGACCCGAAAC
*
41033 CCGAATAACCCG-AAC
1 CCGAATGACCCGAAAC
41048 CC-AGATGACCCGAAAC
1 CCGA-ATGACCCGAAAC
41064 CCGAATGACCCGAAA
1 CCGAATGACCCGAAA
41079 AAACTGCATG
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
14 3 0.06
15 22 0.44
16 22 0.44
17 3 0.06
ACGTcount: A:0.38, C:0.38, G:0.19, T:0.05
Consensus pattern (16 bp):
CCGAATGACCCGAAAC
Found at i:42604 original size:33 final size:33
Alignment explanation
Indices: 42562--42630 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 33
42552 TGTTTATATA
42562 TTTTAACAACAACAAAATGACGTTGCTTAAA-CC
1 TTTTAACAACAACAAAATGACGTTGC-TAAAGCC
* * ** *
42595 TTTTTACAACTAGTAAATGTCGTTGCTAAAGCC
1 TTTTAACAACAACAAAATGACGTTGCTAAAGCC
42628 TTT
1 TTT
42631 ACATAATGAC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
32 4 0.13
33 26 0.87
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (33 bp):
TTTTAACAACAACAAAATGACGTTGCTAAAGCC
Found at i:45455 original size:58 final size:58
Alignment explanation
Indices: 45359--45581 Score: 331
Period size: 58 Copynumber: 3.8 Consensus size: 58
45349 TTGATTACCT
* * * * * * *
45359 TTTTACTTCTTAATTGACTCAATTACCCCGAATGAAGCTAATTA-TCACTGTTTACTCC
1 TTTTACTTCTTGATTAACTTAATTGCTCTGAATTAAGCTAATTACT-ACTGTTTACTCC
* *
45417 TTTTACTTCTTGATTAATTTAATTGCTCTGAATTAAGCTAATTACTATTGTTTACTCC
1 TTTTACTTCTTGATTAACTTAATTGCTCTGAATTAAGCTAATTACTACTGTTTACTCC
45475 TTTTACTTCTTGATTAACTTAATTGCTCTGAATTAAGCTAATTACTACTGTTTACTCC
1 TTTTACTTCTTGATTAACTTAATTGCTCTGAATTAAGCTAATTACTACTGTTTACTCC
* *
45533 TTTTATTTCTTGATTAACTTAATTACTCTGAATTAAGCTAATTACTACT
1 TTTTACTTCTTGATTAACTTAATTGCTCTGAATTAAGCTAATTACTACT
45582 TAATAACTAC
Statistics
Matches: 151, Mismatches: 13, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
58 150 0.99
59 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.08, T:0.46
Consensus pattern (58 bp):
TTTTACTTCTTGATTAACTTAATTGCTCTGAATTAAGCTAATTACTACTGTTTACTCC
Found at i:45621 original size:16 final size:16
Alignment explanation
Indices: 45589--45679 Score: 64
Period size: 16 Copynumber: 5.8 Consensus size: 16
45579 ACTTAATAAC
45589 TACTGTTTACTCCTTT
1 TACTGTTTACTCCTTT
45605 TACT-TTTACTCCATTT
1 TACTGTTTACTCC-TTT
* *
45621 TACTGATTACTTCTTCT
1 TACTGTTTACTCCTT-T
* * *
45638 T-CT-TTAATTCCCTTC
1 TACTGTTTACT-CCTTT
* *
45653 TACTGATTACTTCTTT
1 TACTGTTTACTCCTTT
45669 TACT-TTTACTC
1 TACTGTTTACTC
45680 TTGATTACCA
Statistics
Matches: 55, Mismatches: 14, Indels: 13
0.67 0.17 0.16
Matches are distributed among these distances:
15 17 0.31
16 27 0.49
17 11 0.20
ACGTcount: A:0.16, C:0.25, G:0.03, T:0.55
Consensus pattern (16 bp):
TACTGTTTACTCCTTT
Found at i:45625 original size:32 final size:32
Alignment explanation
Indices: 45588--45679 Score: 114
Period size: 32 Copynumber: 2.9 Consensus size: 32
45578 TACTTAATAA
* *
45588 CTACTGTTTACTCCTTTTACTTTTACTCCATT
1 CTACTGATTACTTCTTTTACTTTTACTCCATT
* * * *
45620 TTACTGATTACTTCTTCTT-CTTTAATTCCCTT
1 CTACTGATTACTTCTT-TTACTTTTACTCCATT
45652 CTACTGATTACTTCTTTTACTTTTACTC
1 CTACTGATTACTTCTTTTACTTTTACTC
45680 TTGATTACCA
Statistics
Matches: 49, Mismatches: 9, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
31 2 0.04
32 45 0.92
33 2 0.04
ACGTcount: A:0.16, C:0.26, G:0.03, T:0.54
Consensus pattern (32 bp):
CTACTGATTACTTCTTTTACTTTTACTCCATT
Found at i:45743 original size:56 final size:56
Alignment explanation
Indices: 45668--45775 Score: 134
Period size: 56 Copynumber: 1.9 Consensus size: 56
45658 ATTACTTCTT
45668 TTACTTTTACTCTTGATTAC-CAATTTACTTCTTACTCCTTTTTA-CTTTTACTCTTAA
1 TTACTTTTACTCTTGATTACTC-ATTTACTT-TTACT-CTTTTTAGCTTTTACTCTTAA
*
45725 TTACTATTT-CTC-TGATTACTTCTTTTACTTTTACTCTTTTTAGCTTTTACT
1 TTACT-TTTACTCTTGATTAC-TCATTTACTTTTACTCTTTTTAGCTTTTACT
45776 GATTACTTCT
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
55 7 0.15
56 20 0.43
57 15 0.33
58 4 0.09
ACGTcount: A:0.19, C:0.21, G:0.03, T:0.57
Consensus pattern (56 bp):
TTACTTTTACTCTTGATTACTCATTTACTTTTACTCTTTTTAGCTTTTACTCTTAA
Found at i:45758 original size:15 final size:17
Alignment explanation
Indices: 45740--45775 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
45730 ATTTCTCTGA
45740 TTACTTC-TTTTA-CTT
1 TTACTTCTTTTTAGCTT
45755 TTAC-TCTTTTTAGCTT
1 TTACTTCTTTTTAGCTT
45771 TTACT
1 TTACT
45776 GATTACTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
14 2 0.11
15 9 0.50
16 7 0.39
ACGTcount: A:0.14, C:0.19, G:0.03, T:0.64
Consensus pattern (17 bp):
TTACTTCTTTTTAGCTT
Found at i:45793 original size:22 final size:21
Alignment explanation
Indices: 45746--45835 Score: 66
Period size: 22 Copynumber: 4.4 Consensus size: 21
45736 CTGATTACTT
*
45746 CTTTTACT-TTTACTCTTTTTA
1 CTTTTACTGATTACT-TTTTTA
45767 GCTTTTACTGATTACTTCTTTTA
1 -CTTTTACTGATTACTT-TTTTA
* *
45790 C-TTT--TG-CT-CTTTTTTG
1 CTTTTACTGATTACTTTTTTA
45806 CTTTTACTGATTACTTCTTTTA
1 CTTTTACTGATTACTT-TTTTA
*
45828 CTTCTACT
1 CTTTTACT
45836 CTTAATTACC
Statistics
Matches: 54, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
16 5 0.09
17 6 0.11
18 1 0.02
19 4 0.07
20 1 0.02
21 6 0.11
22 21 0.39
23 10 0.19
ACGTcount: A:0.13, C:0.20, G:0.06, T:0.61
Consensus pattern (21 bp):
CTTTTACTGATTACTTTTTTA
Found at i:45907 original size:34 final size:37
Alignment explanation
Indices: 45667--45909 Score: 144
Period size: 38 Copynumber: 6.3 Consensus size: 37
45657 GATTACTTCT
* * ** *
45667 TTTACTTTTACTCTTGATTACCAATTTACTTCTTACTCCTT
1 TTTACTTTTACTCTTAATTACC-ATTT-C-TCTGA-TTATC
*
45708 TTTACTTTTACTCTTAATTACTATTTCTCTGATTACTTC
1 TTTACTTTTACTCTTAATTACCATTTCTCTGATTA--TC
* *
45747 TTTTACTTTTACTCTT-TTTAGC-TTT-TACTGATTACTTC
1 -TTTACTTTTACTCTTAATTACCATTTCT-CTGATTA--TC
* * **
45785 TTTTACTTTTGCTCTT-TTTTGC-TTT-TACTGATTACTTC
1 -TTTACTTTTACTCTTAATTACCATTTCT-CTGATTA--TC
*
45823 TTTTACTTCTACTCTTAATTACCATTTCTCTGATTACTTC
1 -TTTACTTTTACTCTTAATTACCATTTCTCTGATTA--TC
45863 TTTTACTTTTACTCTTAATTACCATTTCTCTGATTA-C
1 -TTTACTTTTACTCTTAATTACCATTTCTCTGATTATC
45900 -TT-CTTTTACT
1 TTTACTTTTACT
45910 GATTACTTAT
Statistics
Matches: 178, Mismatches: 17, Indels: 21
0.82 0.08 0.10
Matches are distributed among these distances:
34 8 0.04
35 2 0.01
37 3 0.02
38 68 0.38
39 8 0.04
40 68 0.38
41 21 0.12
ACGTcount: A:0.18, C:0.21, G:0.04, T:0.57
Consensus pattern (37 bp):
TTTACTTTTACTCTTAATTACCATTTCTCTGATTATC
Found at i:45911 original size:16 final size:16
Alignment explanation
Indices: 45892--45923 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45882 TACCATTTCT
*
45892 CTGATTACTTCTTTTA
1 CTGATTACTTATTTTA
45908 CTGATTACTTATTTTA
1 CTGATTACTTATTTTA
45924 TTTCTACTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.22, C:0.16, G:0.06, T:0.56
Consensus pattern (16 bp):
CTGATTACTTATTTTA
Found at i:45912 original size:56 final size:56
Alignment explanation
Indices: 45852--46031 Score: 218
Period size: 56 Copynumber: 3.0 Consensus size: 56
45842 TACCATTTCT
45852 CTGATTACTTCTTTTACTTTTACTCTTAATTACCATTTCTCTGATTACTTCTTTTA
1 CTGATTACTTCTTTTACTTTTACTCTTAATTACCATTTCTCTGATTACTTCTTTTA
* *
45908 CTGATTACTTATTTTA-TTTCTACTCTTAATTACCATTTCTCCGATTACTTCTTTTACTCTATTC
1 CTGATTACTTCTTTTACTTT-TACTCTTAATTACCATTTCTCTGATTA---C---T--TCT-TT-
45972 TA
55 TA
* *
45974 CTGATTACTTCTTTTACTTCTACTCTTAATTACCATTTCTCTGATGACTTCTTTTA
1 CTGATTACTTCTTTTACTTTTACTCTTAATTACCATTTCTCTGATTACTTCTTTTA
46030 CT
1 CT
46032 TCTATTTTTT
Statistics
Matches: 106, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
55 3 0.03
56 45 0.42
57 2 0.02
58 3 0.03
59 1 0.01
60 1 0.01
62 1 0.01
63 1 0.01
64 3 0.03
65 2 0.02
66 42 0.40
67 2 0.02
ACGTcount: A:0.20, C:0.23, G:0.04, T:0.53
Consensus pattern (56 bp):
CTGATTACTTCTTTTACTTTTACTCTTAATTACCATTTCTCTGATTACTTCTTTTA
Found at i:45961 original size:212 final size:213
Alignment explanation
Indices: 45707--46217 Score: 575
Period size: 212 Copynumber: 2.4 Consensus size: 213
45697 TCTTACTCCT
45707 TTTTACTTT-TACTCTTAATTACTATTTCTCTGATTACTTCTTTTACTTTTACTCTTTTTAGCTT
1 TTTTA-TTTCTACTCTTAATTACTATTTCTCTGATTACTTCTTTTACTTTTACTC----TA--TT
* * * * ** *
45771 TTACTGATTACTTCTTTTACTTTTGCTCTT-TTTTGC-TTT-TACTGATTACTTCTTTTACTTCT
59 CTACTGATTACTTCTTTTACTTCTACTCTTAATTACCATTTCT-CTGATGACTTCTTTTACTTCT
* * * * *
45833 A-CTCTTAATTACCATTTCTCTGATTACTTCTTTTACTTTTACTCTTAATTACCATTTCTCTGAT
123 ATCTCTTAATTACCACTTCTCTAATTACTCCTTTTACTATTACTCTTAATTACCACTTCTCTGAT
45897 TACTT-CTTT-TA-C-TGATTACTTA
188 TACTTACTTTATATCTTGATTACTTA
* *
45919 TTTTATTTCTACTCTTAATTACCATTTCTCCGATTA---C--TT-CTTTTACTCTATTCTACTGA
1 TTTTATTTCTACTCTTAATTACTATTTCTCTGATTACTTCTTTTACTTTTACTCTATTCTACTGA
* *
45978 TTACTTCTTTTACTTCTACTCTTAATTACCATTTCTCTGATGACTTCTTTTACTTCTATTTTTTT
66 TTACTTCTTTTACTTCTACTCTTAATTACCATTTCTCTGATGACTTCTTTTACTTCTA-TCTCTT
* * *
46043 AATTACTACTTCTCTAATTACTCCTTTTACTATTACTCTTAATTACTACTTCTCTGATTACTTAT
130 AATTACCACTTCTCTAATTACTCCTTTTACTATTACTCTTAATTACCACTTCTCTGATTACTTAC
* *
46108 TTTACTATTTCTTTGATTTCTTC
195 TTTA-TA--TC-TTGATTACTTA
* * *
46131 TTTTACTTCTACTCTTAATTACTATTTTTCTGATTACTTCTTTTACTTTTACTCCATTCTACTGA
1 TTTTATTTCTACTCTTAATTACTATTTCTCTGATTACTTCTTTTACTTTTACTCTATTCTACTGA
*
46196 TTACTTCTTTTACTTTTACTCT
66 TTACTTCTTTTACTTCTACTCT
46218 GCTCTGCTGA
Statistics
Matches: 252, Mismatches: 27, Indels: 34
0.81 0.09 0.11
Matches are distributed among these distances:
200 29 0.12
201 3 0.01
202 26 0.10
203 1 0.00
204 59 0.23
205 3 0.01
206 9 0.04
207 4 0.02
209 1 0.00
210 1 0.00
211 3 0.01
212 70 0.28
215 1 0.00
217 2 0.01
218 40 0.16
ACGTcount: A:0.19, C:0.21, G:0.03, T:0.56
Consensus pattern (213 bp):
TTTTATTTCTACTCTTAATTACTATTTCTCTGATTACTTCTTTTACTTTTACTCTATTCTACTGA
TTACTTCTTTTACTTCTACTCTTAATTACCATTTCTCTGATGACTTCTTTTACTTCTATCTCTTA
ATTACCACTTCTCTAATTACTCCTTTTACTATTACTCTTAATTACCACTTCTCTGATTACTTACT
TTATATCTTGATTACTTA
Found at i:45983 original size:66 final size:67
Alignment explanation
Indices: 45896--46037 Score: 227
Period size: 66 Copynumber: 2.2 Consensus size: 67
45886 ATTTCTCTGA
* *
45896 TTACTTCT-TT-TACTGATTACTTATTTTATTTCTACTCTTAATTACCATTTCTCCGATTACTTC
1 TTACTTCTATTCTACTGATTACTTATTTTACTTCTACTCTTAATTACCATTTCTCCGATGACTTC
45959 TT
66 TT
* *
45961 TTAC-TCTATTCTACTGATTACTTCTTTTACTTCTACTCTTAATTACCATTTCTCTGATGACTTC
1 TTACTTCTATTCTACTGATTACTTATTTTACTTCTACTCTTAATTACCATTTCTCCGATGACTTC
46025 TT
66 TT
46027 TTACTTCTATT
1 TTACTTCTATT
46038 TTTTTAATTA
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
64 3 0.04
65 6 0.09
66 55 0.79
67 6 0.09
ACGTcount: A:0.20, C:0.23, G:0.04, T:0.54
Consensus pattern (67 bp):
TTACTTCTATTCTACTGATTACTTATTTTACTTCTACTCTTAATTACCATTTCTCCGATGACTTC
TT
Found at i:46062 original size:15 final size:14
Alignment explanation
Indices: 46041--46095 Score: 53
Period size: 15 Copynumber: 4.1 Consensus size: 14
46031 TTCTATTTTT
46041 TTAATTACTACTTC
1 TTAATTACTACTTC
*
46055 TCTAATTACTCCTT-
1 T-TAATTACTACTTC
* *
46069 TT-ACTATTAC-TC
1 TTAATTACTACTTC
46081 TTAATTACTACTTC
1 TTAATTACTACTTC
46095 T
1 T
46096 CTGATTACTT
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
11 1 0.03
12 7 0.23
13 7 0.23
14 5 0.16
15 11 0.35
ACGTcount: A:0.25, C:0.24, G:0.00, T:0.51
Consensus pattern (14 bp):
TTAATTACTACTTC
Found at i:46100 original size:122 final size:120
Alignment explanation
Indices: 45699--46113 Score: 419
Period size: 122 Copynumber: 3.5 Consensus size: 120
45689 AATTTACTTC
* *
45699 TTACTCCTTTTTACTTTTACTCTTAATTACTATTTCTCTGATTACTTCTTTTACTTTTACTCTT-
1 TTACTCC-TTTTACTATTACTCTTAATTACTACTTCTCTGATTACTTCTTTTACTTTTACTCTTA
* * * * *
45763 TTTAGC-TTT-TACTGATTACTTCTTTTACTTT-TGCTCTTTT-TTGCT--TT-TACTGA
65 ATTACCATTTCT-CTGATTACTTCTTTTACTTTAT--TATTTTATTACTACTTCT-CTAA
* * *
45816 TTACTTCTTTTACT-TCTACTCTTAATTACCATTTCTCTGATTACTTCTTTTACTTTTACTCTTA
1 TTACTCCTTTTACTAT-TACTCTTAATTACTACTTCTCTGATTACTTCTTTTACTTTTACTCTTA
*
45880 ATTACCATTTCTCTGATTACTTCTTTTACTGATTACTTATTTTATTTCTAC-TCT-TAA
65 ATTACCATTTCTCTGATTACTTCTTTTACT--TTA-TTATTTTATTACTACTTCTCTAA
* * * *
45937 TTAC-CATTTCTCCGATTACTTCTT--TTACT-CTATTCTACTGATTACTTCTTTTACTTCTACT
1 TTACTCCTTT-TACTATTAC-TCTTAATTACTAC--TTCT-CTGATTACTTCTTTTACTTTTACT
* *
45998 CTTAATTACCATTTCTCTGATGACTTCTTTTACTTCTATTTTTTTAATTACTACTTCTCTAA
61 CTTAATTACCATTTCTCTGATTACTTCTTTTACTT-TATTATTTT-ATTACTACTTCTCTAA
*
46060 TTACTCCTTTTACTATTACTCTTAATTACTACTTCTCTGATTACTTATTTTACT
1 TTACTCCTTTTACTATTACTCTTAATTACTACTTCTCTGATTACTTCTTTTACT
46114 ATTTCTTTGA
Statistics
Matches: 251, Mismatches: 21, Indels: 47
0.79 0.07 0.15
Matches are distributed among these distances:
115 1 0.00
116 53 0.21
117 10 0.04
118 21 0.08
119 1 0.00
120 21 0.08
121 28 0.11
122 87 0.35
123 19 0.08
124 9 0.04
125 1 0.00
ACGTcount: A:0.19, C:0.22, G:0.03, T:0.56
Consensus pattern (120 bp):
TTACTCCTTTTACTATTACTCTTAATTACTACTTCTCTGATTACTTCTTTTACTTTTACTCTTAA
TTACCATTTCTCTGATTACTTCTTTTACTTTATTATTTTATTACTACTTCTCTAA
Found at i:46102 original size:25 final size:25
Alignment explanation
Indices: 46057--46104 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
46047 ACTACTTCTC
* *
46057 TAATTACTCCTTTTACTATTACTCT
1 TAATTACTACTTCTACTATTACTCT
46082 TAATTACTACTTCT-CTGATTACT
1 TAATTACTACTTCTACT-ATTACT
46105 TATTTTACTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.25, C:0.23, G:0.02, T:0.50
Consensus pattern (25 bp):
TAATTACTACTTCTACTATTACTCT
Found at i:46114 original size:24 final size:24
Alignment explanation
Indices: 46085--46137 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
46075 TTACTCTTAA
46085 TTACTACTTCTCTGATTACTTATT
1 TTACTACTTCTCTGATTACTTATT
* * * *
46109 TTACTATTTCTTTGATTTCTTCTT
1 TTACTACTTCTCTGATTACTTATT
46133 TTACT
1 TTACT
46138 TCTACTCTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.17, C:0.19, G:0.04, T:0.60
Consensus pattern (24 bp):
TTACTACTTCTCTGATTACTTATT
Found at i:46116 original size:40 final size:40
Alignment explanation
Indices: 45649--46113 Score: 348
Period size: 40 Copynumber: 11.6 Consensus size: 40
45639 CTTTAATTCC
* *
45649 CTTCTACTGATTACTTCTTTTACTTTTACTCTTGATTACCA
1 CTTCT-CTGATTACTTCTTTTACTTTTACTCTTAATTACTA
* ** *
45690 ATT-TACTTCTTACTCCTTTTTACTTTTACTCTTAATTACTA
1 CTTCT-CTGATTACTTC-TTTTACTTTTACTCTTAATTACTA
*
45731 TTTCTCTGATTACTTCTTTTACTTTTACTCTT--TT--TA
1 CTTCTCTGATTACTTCTTTTACTTTTACTCTTAATTACTA
* * * *
45767 GCTTTTACTGATTACTTCTTTTACTTTTGCTCTT--TT-TTG
1 -CTTCT-CTGATTACTTCTTTTACTTTTACTCTTAATTACTA
* * *
45806 CTTTTACTGATTACTTCTTTTACTTCTACTCTTAATTACCA
1 CTTCT-CTGATTACTTCTTTTACTTTTACTCTTAATTACTA
* *
45847 TTTCTCTGATTACTTCTTTTACTTTTACTCTTAATTACCA
1 CTTCTCTGATTACTTCTTTTACTTTTACTCTTAATTACTA
* * * * *
45887 TTTCTCTGATTACTTCTTTTACTGATTACTTATTTTATTTCTA
1 CTTCTCTGATTACTTCTTTTACT-TTTAC-T-CTTAATTACTA
* * **
45930 C-TCT-TAATTAC--CATTTCTCCGATTACTTCTT--TTACT-
1 CTTCTCTGATTACTTC-TTT-TACTTTTAC-TCTTAATTACTA
* *
45966 CTATTCTACTGATTACTTCTTTTACTTCTACTCTTAATTACCA
1 C--TTCT-CTGATTACTTCTTTTACTTTTACTCTTAATTACTA
* * ** *
46009 TTTCTCTGATGACTTCTTTTACTTCTATTTTTTTAATTACTA
1 CTTCTCTGATTACTTCTTTTACTT-T-TACTCTTAATTACTA
* * *
46051 CTTCTCTAATTACTCCTTTTACTATTACTCTTAATTACTA
1 CTTCTCTGATTACTTCTTTTACTTTTACTCTTAATTACTA
*
46091 CTTCTCTGATTACTTATTTTACT
1 CTTCTCTGATTACTTCTTTTACT
46114 ATTTCTTTGA
Statistics
Matches: 342, Mismatches: 57, Indels: 51
0.76 0.13 0.11
Matches are distributed among these distances:
36 3 0.01
37 7 0.02
38 61 0.18
39 7 0.02
40 149 0.44
41 65 0.19
42 42 0.12
43 8 0.02
ACGTcount: A:0.19, C:0.22, G:0.03, T:0.55
Consensus pattern (40 bp):
CTTCTCTGATTACTTCTTTTACTTTTACTCTTAATTACTA
Found at i:46153 original size:40 final size:40
Alignment explanation
Indices: 46109--46184 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
46099 ATTACTTATT
*
46109 TTACTATTTCTT-TGATTTCTTCTTTTACTTCTACTCTTAA
1 TTACTATTT-TTCTGATTACTTCTTTTACTTCTACTCTTAA
*
46149 TTACTATTTTTCTGATTACTTCTTTTACTTTTACTC
1 TTACTATTTTTCTGATTACTTCTTTTACTTCTACTC
46185 CATTCTACTG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
39 2 0.06
40 31 0.94
ACGTcount: A:0.17, C:0.20, G:0.03, T:0.61
Consensus pattern (40 bp):
TTACTATTTTTCTGATTACTTCTTTTACTTCTACTCTTAA
Found at i:46199 original size:32 final size:32
Alignment explanation
Indices: 46160--46268 Score: 173
Period size: 32 Copynumber: 3.4 Consensus size: 32
46150 TACTATTTTT
46160 CTGATTACTTCTTTTACTTTTACTCCATTCTA
1 CTGATTACTTCTTTTACTTTTACTCCATTCTA
*** *
46192 CTGATTACTTCTTTTACTTTTACTCTGCTCTG
1 CTGATTACTTCTTTTACTTTTACTCCATTCTA
*
46224 CTGATTACTTCTTTTACTTTTACTCCATTTTA
1 CTGATTACTTCTTTTACTTTTACTCCATTCTA
46256 CTGATTACTTCTT
1 CTGATTACTTCTT
46269 CTTTTTTTTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 68 1.00
ACGTcount: A:0.17, C:0.24, G:0.06, T:0.54
Consensus pattern (32 bp):
CTGATTACTTCTTTTACTTTTACTCCATTCTA
Found at i:46345 original size:56 final size:56
Alignment explanation
Indices: 46273--46450 Score: 275
Period size: 57 Copynumber: 3.1 Consensus size: 56
46263 CTTCTTCTTT
*
46273 TTTTTAGTTTAGTTACTCAGAATTAAACTAATTACTGTTACTCTTCTTTCCTTTAC
1 TTTTTAGTTTAATTACTCAGAATTAAACTAATTACTGTTACTCTTCTTTCCTTTAC
46329 TTTTTAGTTTAATTACTCAGAATTAAACTAATTACTGTTTACTCTTCTTTCCTTTAC
1 TTTTTAGTTTAATTACTCAGAATTAAACTAATTACTG-TTACTCTTCTTTCCTTTAC
* *
46386 TTTTTAGTTTAATTACTCAGAATTAAACTAATTGCTACTTACTCTTTCTTTTACTCTTTAC
1 TTTTTAGTTTAATTACTCAGAATTAAACTAATTACT-GTTACTC-TTC-TTT-C-CTTTAC
46447 TTTT
1 TTTT
46451 CTGCTTACTT
Statistics
Matches: 113, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
56 36 0.32
57 60 0.53
58 3 0.03
59 3 0.03
60 1 0.01
61 10 0.09
ACGTcount: A:0.25, C:0.17, G:0.06, T:0.52
Consensus pattern (56 bp):
TTTTTAGTTTAATTACTCAGAATTAAACTAATTACTGTTACTCTTCTTTCCTTTAC
Found at i:46441 original size:12 final size:13
Alignment explanation
Indices: 46424--46599 Score: 130
Period size: 12 Copynumber: 14.1 Consensus size: 13
46414 TAATTGCTAC
46424 TTACTCTTT-CTT
1 TTACTCTTTACTT
46436 TTACTCTTTACTT
1 TTACTCTTTACTT
46449 TT-CTGC-TTACTT
1 TTACT-CTTTACTT
46461 TTACTCTTTACTT
1 TTACTCTTTACTT
*
46474 TT-CTGTTTACTCT
1 TTACTCTTTACT-T
*
46487 TT-CT-TTTACTCA
1 TTACTCTTTACT-T
46499 TTAC-CTTT-CTGT
1 TTACTCTTTACT-T
46511 TTACTCTTT-CTT
1 TTACTCTTTACTT
*
46523 TTACTCTTTACCT
1 TTACTCTTTACTT
*
46536 TT-CTGTTTACTCT
1 TTACTCTTTACT-T
46549 TT-CT-TTTACTCT
1 TTACTCTTTACT-T
*
46561 TTAC-CTTT-CGGT
1 TTACTCTTTAC-TT
46573 TTACTCTTT-CTT
1 TTACTCTTTACTT
46585 TTACTCTTTTACTT
1 TTACTC-TTTACTT
46599 T
1 T
46600 GAATTAAAAC
Statistics
Matches: 139, Mismatches: 9, Indels: 30
0.78 0.05 0.17
Matches are distributed among these distances:
12 83 0.60
13 52 0.37
14 4 0.03
ACGTcount: A:0.11, C:0.24, G:0.03, T:0.61
Consensus pattern (13 bp):
TTACTCTTTACTT
Found at i:46462 original size:25 final size:25
Alignment explanation
Indices: 46433--46496 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
46423 CTTACTCTTT
46433 CTTTTACTCTTTACTTTTCTGCTTA
1 CTTTTACTCTTTACTTTTCTGCTTA
*
46458 CTTTTACTCTTTACTTTTCTGTTTA
1 CTTTTACTCTTTACTTTTCTGCTTA
46483 CTCTTT-CT-TTTACT
1 CT-TTTACTCTTTACT
46497 CATTACCTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
24 6 0.16
25 28 0.76
26 3 0.08
ACGTcount: A:0.11, C:0.23, G:0.03, T:0.62
Consensus pattern (25 bp):
CTTTTACTCTTTACTTTTCTGCTTA
Found at i:46494 original size:31 final size:31
Alignment explanation
Indices: 46458--46593 Score: 245
Period size: 31 Copynumber: 4.4 Consensus size: 31
46448 TTTCTGCTTA
*
46458 CTTTTACTCTTTACTTTTCTGTTTACTCTTT
1 CTTTTACTCTTTACCTTTCTGTTTACTCTTT
*
46489 CTTTTACTCATTACCTTTCTGTTTACTCTTT
1 CTTTTACTCTTTACCTTTCTGTTTACTCTTT
46520 CTTTTACTCTTTACCTTTCTGTTTACTCTTT
1 CTTTTACTCTTTACCTTTCTGTTTACTCTTT
*
46551 CTTTTACTCTTTACCTTTCGGTTTACTCTTT
1 CTTTTACTCTTTACCTTTCTGTTTACTCTTT
46582 CTTTTACTCTTT
1 CTTTTACTCTTT
46594 TACTTTGAAT
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 101 1.00
ACGTcount: A:0.10, C:0.25, G:0.04, T:0.61
Consensus pattern (31 bp):
CTTTTACTCTTTACCTTTCTGTTTACTCTTT
Found at i:51158 original size:22 final size:22
Alignment explanation
Indices: 51130--51171 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
51120 CCACCGTAAA
*
51130 CAATTAAGGATTTAACGTTACT
1 CAATTAAGGATATAACGTTACT
51152 CAATTAAGGATATAACGTTA
1 CAATTAAGGATATAACGTTA
51172 TCGATTTCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.33
Consensus pattern (22 bp):
CAATTAAGGATATAACGTTACT
Found at i:51276 original size:15 final size:15
Alignment explanation
Indices: 51256--51291 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
51246 TGTATATTTT
*
51256 TTAAAAATTAAAATA
1 TTAAAAAATAAAATA
*
51271 TTAAAAAATAAATTA
1 TTAAAAAATAAAATA
51286 TTAAAA
1 TTAAAA
51292 GAAACTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TTAAAAAATAAAATA
Found at i:53438 original size:61 final size:61
Alignment explanation
Indices: 53343--53467 Score: 250
Period size: 61 Copynumber: 2.0 Consensus size: 61
53333 TCATCAGAAT
53343 TTCAGGTGACAAACCTGTAAAATTAAGAAAAAAGTCTTATTTCTGTAGACAAACCGAGCTG
1 TTCAGGTGACAAACCTGTAAAATTAAGAAAAAAGTCTTATTTCTGTAGACAAACCGAGCTG
53404 TTCAGGTGACAAACCTGTAAAATTAAGAAAAAAGTCTTATTTCTGTAGACAAACCGAGCTG
1 TTCAGGTGACAAACCTGTAAAATTAAGAAAAAAGTCTTATTTCTGTAGACAAACCGAGCTG
53465 TTC
1 TTC
53468 TTTACTGCAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 64 1.00
ACGTcount: A:0.38, C:0.17, G:0.18, T:0.27
Consensus pattern (61 bp):
TTCAGGTGACAAACCTGTAAAATTAAGAAAAAAGTCTTATTTCTGTAGACAAACCGAGCTG
Done.