genome.fa.s11639.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011639.1 Corchorus capsularis cultivar CVL-1 contig11660, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67578

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11416--11451	18	2.0	18	100	0	72	55	5	38	0	1.23
19738--19798	7	7.9	7	73	20	50	6	24	37	31	1.81
19725--19799	16	4.8	16	82	6	82	6	21	38	33	1.79
19714--19798	32	2.7	32	83	5	102	7	22	37	32	1.81
20244--20295	21	2.5	20	85	11	70	59	5	5	28	1.44
20400--20452	16	3.3	16	84	5	63	5	18	41	33	1.74
20522--20555	9	3.7	9	88	4	50	2	14	58	23	1.50
21782--21822	20	2.0	20	100	0	82	51	9	9	29	1.67
23201--23277	38	2.0	38	97	0	145	35	16	12	35	1.88
23320--23356	19	2.0	18	89	5	56	18	24	8	48	1.75
25781--25857	38	2.0	38	100	0	154	33	12	18	35	1.89
26774--27250	30	15.6	30	88	2	578	34	17	16	30	1.93
26774--27250	182	2.6	181	87	3	654	34	17	16	30	1.93
28048--28104	30	1.9	30	89	7	89	36	24	7	31	1.82
28269--28300	16	2.0	16	93	0	55	6	34	6	53	1.51
28364--28420	29	2.0	29	86	6	80	50	5	22	21	1.68
35440--35478	15	2.4	15	87	12	51	64	7	12	15	1.49
44349--44386	6	6.3	6	100	0	76	31	34	0	34	1.58
44812--44887	29	2.6	28	70	15	73	43	28	10	17	1.82
49318--49352	18	2.0	17	88	5	52	34	5	5	54	1.48
49336--49873	22	24.9	22	66	16	169	35	15	9	38	1.81
49556--49614	23	2.6	23	83	8	75	37	18	6	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49798--49846	19	2.5	20	86	3	73	28	20	10	40	1.85
49952--50236	22	12.8	21	67	17	103	33	14	10	41	1.80
50356--50563	66	3.1	65	82	6	222	38	20	8	32	1.83
50356--50563	22	9.4	22	77	9	172	38	20	8	32	1.83
50739--50776	19	2.0	20	85	15	53	63	2	5	28	1.30
52277--52310	15	2.2	16	89	5	52	50	0	8	41	1.34
52526--52569	22	2.0	22	82	8	54	40	13	4	40	1.65
52637--52714	22	3.6	22	77	3	68	29	14	8	47	1.74
52860--52986	23	5.6	22	76	9	78	38	13	7	40	1.74
52877--52964	23	3.8	23	84	3	97	37	14	9	38	1.78
52860--52964	45	2.3	46	81	4	115	39	13	8	39	1.75
52681--53173	22	22.6	22	68	12	189	36	15	10	38	1.81
53369--53395	14	1.9	14	100	0	54	37	3	14	44	1.63
53515--53637	22	5.5	22	72	9	70	35	20	8	35	1.82
53677--53858	22	8.3	22	75	12	99	37	18	10	33	1.85
53684--53806	42	2.9	41	81	9	104	37	16	11	34	1.84
55087--55168	38	2.2	37	82	6	103	60	10	13	14	1.58
55289--55348	32	1.9	32	93	3	104	53	3	15	28	1.57
55289--55355	32	2.1	32	88	2	100	52	4	17	25	1.64
55612--55795	91	2.0	92	94	1	325	43	16	4	35	1.68
55837--55874	2	20.0	2	89	10	62	52	0	0	47	1.00
58541--58800	110	2.4	110	94	2	452	38	10	1	49	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62791--62851	29	2.1	29	87	0	86	36	22	3	37	1.71
65602--66089	266	1.8	266	88	2	757	38	20	13	28	1.90
65870--66311	222	2.0	222	91	2	719	37	19	14	28	1.91
65585--66577	488	2.0	488	88	3	1455	37	19	13	29	1.90
66092--66844	266	2.8	267	88	1	1152	36	18	14	30	1.90
66752--66942	97	2.0	97	88	2	285	30	24	16	28	1.96
66490--67196	362	2.0	363	88	2	1062	34	20	14	29	1.93
66853--67578	264	2.7	263	86	4	980	35	18	14	31	1.92

Tables:   1

The End!