Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011640.1 Corchorus capsularis cultivar CVL-1 contig11661, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33087

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--1196
266
4.5
266
91
0
1861
34
17
15
32
1.91
5525--5549
2
12.5
2
100
0
50
52
0
0
48
1.00
5857--6047
101
1.9
97
87
4
274
38
27
14
19
1.91
7568--7608
20
2.0
20
100
0
82
41
4
19
34
1.73
7905--7945
20
2.0
20
100
0
82
41
4
19
34
1.73
7958--8014
28
2.0
28
83
6
71
54
12
14
19
1.71
8228--8274
22
2.1
22
100
0
94
57
4
8
29
1.48
12880--12923
18
2.4
18
80
0
52
65
22
2
9
1.32
22442--22477
17
2.1
17
100
0
72
47
22
5
25
1.73
24768--24826
4
14.8
4
92
0
55
50
10
0
38
1.36
24769--24823
8
6.9
8
87
0
65
52
10
0
36
1.37
29555--29595
15
2.7
15
88
11
57
26
14
29
29
1.95
29586--29713
16
8.4
16
79
14
128
21
8
36
33
1.84
29529--29697
73
2.3
73
98
0
329
21
10
36
31
1.87
29571--29681
57
1.9
57
87
7
163
22
9
36
31
1.87
29628--29668
15
2.7
15
88
11
57
26
14
29
29
1.95
29555--29742
89
2.1
88
92
3
306
22
11
34
31
1.89
32372--32441
29
2.4
29
87
2
95
7
34
38
20
1.80
32384--32507
27
4.4
27
79
9
97
8
29
40
20
1.83
32368--32495
30
4.4
30
72
14
108
7
31
37
23
1.83
32416--32525
27
4.0
27
77
11
96
7
30
39
23
1.82
32624--32695
28
2.6
29
81
12
82
16
29
27
26
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32624--32688
30
2.3
29
84
10
82
18
29
27
24
1.98
32641--32719
28
2.8
28
84
7
88
18
30
30
20
1.97
32591--32891
151
2.0
153
90
2
482
16
20
25
37
1.93
32801--32880
29
2.7
29
84
3
97
12
30
36
21
1.90
32933--33030
30
3.3
30
85
2
117
8
31
34
25
1.85
33029--33085
26
2.1
27
90
6
89
12
33
36
17
1.87

Tables:   1

The End!