Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011642.1 Corchorus capsularis cultivar CVL-1 contig11663, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59770

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--35
2
17.5
2
100
0
70
48
0
0
51
1.00
1152--1192
20
2.0
20
100
0
82
51
14
4
29
1.63
1940--2027
33
2.7
33
82
3
106
15
37
34
12
1.86
3440--3610
87
1.9
89
92
2
292
36
8
9
45
1.67
4717--4756
2
19.5
2
87
10
55
47
2
2
47
1.29
5034--5085
22
2.4
22
80
6
61
19
15
23
42
1.89
9150--9183
7
4.7
7
96
3
59
70
14
2
11
1.27
13954--14000
24
1.9
25
95
4
87
27
10
10
51
1.70
18876--18904
2
14.5
2
100
0
58
51
48
0
0
1.00
19748--19777
10
3.0
10
95
0
51
43
0
6
50
1.28
19775--19799
2
12.5
2
100
0
50
0
0
48
52
1.00
23212--23306
32
3.0
32
85
3
138
26
16
8
48
1.75
23212--23305
31
3.0
31
87
1
134
26
17
8
47
1.75
23331--23593
130
2.0
132
90
4
422
38
10
6
45
1.63
26375--26408
12
2.8
12
100
0
68
41
0
0
58
0.98
30057--30113
15
3.7
14
78
17
60
68
12
0
19
1.20
30216--30508
149
2.0
144
93
3
505
21
12
32
33
1.91
30533--30950
221
1.9
220
93
1
730
29
25
10
34
1.88
31397--31424
14
2.0
14
100
0
56
57
21
7
14
1.61
33575--33824
129
1.9
128
95
0
455
26
20
18
34
1.96
40074--40116
13
3.2
13
86
3
59
2
13
0
83
0.74
40077--40116
21
2.0
20
90
5
62
2
12
0
85
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42107--42135
4
7.2
4
100
0
58
24
0
24
51
1.48
46240--46325
35
2.6
33
90
7
138
16
10
15
58
1.63
46899--46984
29
3.0
29
84
3
120
34
26
22
16
1.95
52676--52714
16
2.4
16
95
4
69
38
25
0
35
1.56
56192--56280
45
2.0
45
95
2
162
31
20
23
24
1.98
56590--56989
167
2.4
166
86
4
554
30
15
16
37
1.90
57660--58666
438
2.3
435
85
4
1294
42
13
13
30
1.83

Tables:   1

The End!