Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011644.1 Corchorus capsularis cultivar CVL-1 contig11665, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6985
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:3950 original size:8 final size:8

Alignment explanation


    Indices: 3929--3959  Score: 53
    Period size: 8  Copynumber: 3.8  Consensus size: 8

       3919 ATCCGCATCC

                     
       3929 TTTTATTGG
          1 TTTTATT-G

                    
       3938 TTTTATTG
          1 TTTTATTG

                    
       3946 TTTTATTG
          1 TTTTATTG

                  
       3954 TTTTAT
          1 TTTTAT

       3960 ACTATTGGTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   8   15  0.68
   9    7  0.32

ACGTcount: A:0.13, C:0.00, G:0.13, T:0.74


Consensus pattern (8 bp):   
TTTTATTG

Found at i:4382 original size:4 final size:4

Alignment explanation


    Indices: 4373--4411  Score: 78
    Period size: 4  Copynumber: 9.8  Consensus size: 4

       4363 CCTTTTAAAT

                                                            
       4373 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
          1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT

       4412 TCTTTATCAA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   35  1.00

ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51


Consensus pattern (4 bp):   
TATG

Done.