Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011645.1 Corchorus capsularis cultivar CVL-1 contig11666, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119390

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5383--5490
31
3.5
31
79
3
112
10
18
36
35
1.85
5395--5483
16
5.7
15
77
6
88
8
19
35
35
1.83
5383--5490
16
7.0
15
74
11
85
10
18
36
35
1.85
6316--6388
32
2.3
32
80
4
85
12
21
32
32
1.91
6344--6385
16
2.6
16
75
14
50
11
23
35
28
1.91
6416--6466
25
2.0
26
88
7
77
5
11
56
25
1.57
7842--7875
2
17.5
2
93
6
61
50
0
0
50
1.00
12107--12135
13
2.1
14
93
6
51
13
27
13
44
1.82
15492--15651
21
7.8
21
77
8
150
25
11
31
31
1.92
19278--19325
23
2.0
24
92
4
80
45
20
2
31
1.63
24216--24249
11
3.1
11
86
0
50
26
47
5
20
1.73
26540--26637
42
2.3
42
92
0
160
29
24
18
27
1.98
35223--35247
4
6.2
4
100
0
50
24
0
0
76
0.80
50744--50803
16
3.7
17
78
10
72
20
6
33
40
1.78
50751--50855
32
3.3
32
89
2
149
16
9
36
38
1.81
50790--50845
16
3.5
16
71
9
51
17
7
32
42
1.77
50997--51035
20
2.0
20
85
10
53
35
5
5
53
1.45
51066--51107
16
2.6
16
88
7
59
7
11
26
54
1.62
57279--57468
95
2.0
96
97
1
364
42
13
12
31
1.81
57538--57575
19
2.0
20
90
10
62
26
31
5
36
1.79
79665--79703
13
2.8
15
85
14
57
64
0
28
7
1.21
84147--84209
16
4.4
16
67
29
52
53
3
22
20
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
84134--84248
40
2.9
40
97
2
214
53
2
21
21
1.57
84292--84374
32
2.5
33
84
13
125
54
3
18
24
1.59
84307--84401
26
3.4
26
83
12
93
52
4
16
26
1.62
84396--84467
28
2.6
28
86
10
103
55
4
22
18
1.59
84396--84546
14
11.0
14
70
17
86
52
6
22
18
1.68
84396--84484
28
3.2
27
81
12
99
55
5
21
17
1.63
84417--84546
42
3.2
43
76
15
123
51
6
22
19
1.70
84588--84693
22
4.8
22
71
9
72
54
4
21
18
1.62
84660--84709
14
3.4
14
80
5
55
56
2
24
18
1.52
84676--84740
22
3.0
22
79
2
78
50
4
23
21
1.67
85551--85623
38
1.9
38
91
5
121
28
15
20
35
1.93
89319--89360
19
2.3
18
88
8
59
83
0
7
9
0.81
89319--89360
18
2.3
19
87
4
59
83
0
7
9
0.81

Tables:   1

The End!