Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011646.1 Corchorus capsularis cultivar CVL-1 contig11667, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36188

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
993--1023
15
2.1
15
93
0
53
70
0
3
25
1.02
1733--1764
9
3.4
9
91
8
55
15
0
0
84
0.63
1735--1763
10
3.0
10
95
5
51
17
0
0
82
0.66
13669--13767
29
3.4
28
71
15
92
34
19
20
26
1.96
13637--13798
60
2.7
60
88
4
231
37
19
18
24
1.94
13829--13994
31
5.5
30
68
18
121
25
19
21
34
1.96
13859--13959
29
3.4
29
71
22
93
23
20
21
33
1.97
13829--13990
60
2.7
60
92
3
265
24
19
20
35
1.96
15691--15824
66
2.0
66
95
0
241
34
17
17
30
1.93
21743--21769
12
2.2
12
100
0
54
74
0
7
18
1.05
22763--23691
442
2.1
440
82
5
1113
27
13
17
41
1.87
24156--24387
117
2.0
116
89
4
360
46
4
11
37
1.59
26593--27125
265
2.0
268
92
1
901
28
18
14
38
1.90
27165--27222
29
2.0
29
100
0
116
31
27
10
31
1.90
29759--29814
28
2.1
28
93
6
98
25
21
23
30
1.99
29862--30004
69
2.1
69
94
0
250
21
26
10
41
1.85
30089--30251
31
5.5
31
76
12
155
17
23
26
32
1.97
30171--30212
22
1.9
22
100
0
84
19
16
26
38
1.92
30140--30242
53
1.9
53
88
0
152
17
20
26
35
1.94
32023--32053
15
2.1
15
93
0
53
38
6
25
29
1.81
36096--36135
17
2.4
17
86
0
62
50
15
10
25
1.74

Tables:   1

The End!