Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011648.1 Corchorus capsularis cultivar CVL-1 contig11669, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40849

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23--53
11
2.8
11
95
0
53
19
0
0
80
0.71
187--232
21
2.1
22
84
4
58
41
8
36
13
1.75
551--580
2
14.5
2
93
6
51
46
3
0
50
1.18
1873--1905
2
16.5
2
93
0
57
48
0
0
51
1.00
3088--3112
2
12.5
2
100
0
50
52
0
0
48
1.00
4124--4189
34
1.9
34
93
6
116
22
12
33
31
1.91
4124--4197
34
2.3
32
86
13
100
24
12
32
31
1.92
8122--8215
45
2.2
42
90
7
145
36
5
20
38
1.75
8576--8710
48
2.8
48
83
0
171
25
31
19
22
1.98
8753--8816
31
2.1
29
85
5
83
29
12
9
48
1.72
8761--8826
29
2.2
31
86
10
93
24
10
10
54
1.66
15054--15099
24
2.0
23
87
8
67
63
6
10
19
1.48
15569--15603
16
2.2
16
94
0
61
45
14
28
11
1.79
15648--15870
90
2.5
91
90
0
340
36
12
20
30
1.89
15780--15834
26
2.1
26
83
6
67
40
12
18
29
1.87
18610--18644
16
2.2
16
94
0
61
48
14
25
11
1.77
18689--18911
90
2.5
91
90
0
349
35
11
20
32
1.89
19662--19726
30
2.1
31
85
5
87
26
6
23
44
1.76
20449--20526
32
2.5
31
87
8
122
39
8
11
39
1.73
21405--21466
15
3.9
15
73
10
52
19
4
33
41
1.72
21403--21468
32
2.1
32
88
0
96
18
7
34
39
1.79
21403--21483
16
5.0
16
75
11
58
19
7
33
39
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21422--21482
32
1.9
32
86
0
86
19
8
32
39
1.81
22167--22606
222
2.0
222
98
0
853
40
10
12
35
1.78
25621--25724
52
2.0
51
92
5
174
27
15
15
41
1.87
34152--34176
10
2.5
10
100
0
50
24
8
20
48
1.76
37172--37240
34
2.0
34
91
0
111
56
17
14
11
1.67

Tables:   1

The End!