Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01011649.1 Corchorus capsularis cultivar CVL-1 contig11670, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4867
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36


Found at i:303 original size:30 final size:29

Alignment explanation


    Indices: 269--326  Score: 89
    Period size: 30  Copynumber: 2.0  Consensus size: 29

        259 TTGGCTTATT

                                          
        269 AGAAAAAGGCCAGGTGTTGTTGCCAAAAAA
          1 AGAAAAAGGCCAGGTGTTGTT-CCAAAAAA

                   *   *                
        299 AGAAAAATGCCGGGTGTTGTTCCAAAAA
          1 AGAAAAAGGCCAGGTGTTGTTCCAAAAA

        327 CACACGTTCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  29    7  0.27
  30   19  0.73

ACGTcount: A:0.41, C:0.14, G:0.26, T:0.19


Consensus pattern (29 bp):   
AGAAAAAGGCCAGGTGTTGTTCCAAAAAA

Found at i:2502 original size:32 final size:32

Alignment explanation


    Indices: 2457--2517  Score: 104
    Period size: 32  Copynumber: 1.9  Consensus size: 32

       2447 TTTGTGTCCT

                    *                       
       2457 ATAATTTGGTCTTATAGTCATTTACATTGCCC
          1 ATAATTTGATCTTATAGTCATTTACATTGCCC

                              *          
       2489 ATAATTTGATCTTATAGTTATTTACATTG
          1 ATAATTTGATCTTATAGTCATTTACATTG

       2518 TTCGTACACG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  32   27  1.00

ACGTcount: A:0.28, C:0.13, G:0.11, T:0.48


Consensus pattern (32 bp):   
ATAATTTGATCTTATAGTCATTTACATTGCCC
Done.