genome.fa.s11650.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011650.1 Corchorus capsularis cultivar CVL-1 contig11671, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89246

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533--648	25	4.6	25	83	0	124	31	25	21	22	1.98
2958--3007	22	2.3	22	96	0	91	38	26	4	32	1.75
3862--3972	22	5.0	22	76	2	116	37	8	19	34	1.82
3847--3972	44	2.9	43	75	11	130	40	8	17	33	1.80
4150--4246	43	2.2	44	82	10	119	31	9	18	40	1.82
4150--4419	22	12.3	22	70	6	134	35	8	15	40	1.78
4215--4330	45	2.6	45	79	1	144	40	6	11	41	1.67
4215--4352	44	3.1	44	77	2	150	40	7	10	40	1.69
5552--5615	32	2.0	32	93	0	110	29	29	7	32	1.86
5961--6031	26	2.7	26	82	2	79	18	16	21	43	1.88
9559--9827	82	3.3	82	92	1	441	44	10	19	26	1.82
9559--9910	41	8.6	40	74	10	259	44	10	18	26	1.82
9559--9973	82	5.2	81	84	7	412	44	10	18	26	1.82
9842--10318	70	6.9	70	88	5	636	43	9	18	29	1.80
9948--10067	31	4.0	29	76	10	116	45	8	17	28	1.77
10037--10364	41	8.9	39	71	23	214	43	9	18	28	1.80
10078--10277	29	6.0	31	68	25	97	43	8	19	29	1.80
10316--10588	37	7.2	36	83	8	289	46	8	18	26	1.78
10334--10588	74	3.4	75	85	6	336	45	8	18	27	1.79
10360--10588	111	2.0	114	88	3	338	45	8	19	27	1.78
10552--10615	28	2.3	28	94	0	110	48	6	15	29	1.70
10621--10980	41	8.8	41	90	3	514	45	10	20	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10990--11151	32	4.9	32	87	8	236	45	6	20	28	1.75
10976--11151	68	2.6	67	89	7	270	44	6	20	28	1.75
10990--11188	100	2.0	100	87	3	285	45	7	20	27	1.76
19406--19480	22	3.4	21	78	12	62	37	12	10	40	1.77
19885--20059	76	2.3	76	94	0	314	34	24	16	25	1.95
21386--21423	20	1.9	20	100	0	76	5	15	34	44	1.69
24822--25201	76	5.0	76	98	0	733	35	21	16	26	1.95
32639--32695	27	2.2	27	90	6	91	56	3	19	21	1.57
33594--33927	167	2.0	167	98	0	641	27	23	17	32	1.96
34103--34142	6	6.7	6	97	0	71	87	12	0	0	0.54
39381--39441	27	2.3	26	76	21	63	45	9	0	44	1.37
41892--41974	43	2.0	41	85	7	112	50	8	13	27	1.70
41902--41975	22	3.6	21	72	13	64	48	8	16	27	1.74
42025--42100	21	3.6	21	83	3	80	40	6	10	42	1.65
48362--48481	15	8.4	15	75	18	96	24	60	1	13	1.42
48362--48481	30	4.2	29	73	16	108	24	60	1	13	1.42
48362--48464	54	1.9	54	92	4	172	24	60	1	13	1.44
48387--48492	24	4.2	24	72	18	81	23	61	1	13	1.42
55974--56019	20	2.2	21	92	3	76	23	6	17	52	1.68
69558--70031	256	1.9	256	99	0	939	34	20	14	31	1.92
73891--73931	2	21.5	2	87	9	59	43	0	0	56	0.99
73885--73932	22	2.1	24	92	7	82	39	2	0	58	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78493--78554	28	2.2	28	82	2	70	17	12	22	46	1.82
79527--79584	28	2.1	28	96	0	107	29	27	12	31	1.92
79535--79591	15	3.9	15	72	9	55	29	22	14	33	1.93
81670--81829	55	2.9	55	90	2	252	48	8	18	25	1.76
82063--82290	22	10.6	21	70	16	112	56	6	19	17	1.63
82062--82290	43	5.3	42	72	10	144	55	6	20	17	1.63
82268--82323	15	3.9	15	74	9	62	57	5	21	16	1.59
82061--82289	21	10.7	20	70	13	129	55	6	20	17	1.63
82305--82361	22	2.6	21	88	8	78	54	5	19	21	1.63
82401--82484	42	2.0	43	85	2	116	50	8	21	20	1.74
82403--82480	21	3.7	21	75	14	79	48	8	20	21	1.77
82556--82604	13	3.5	13	75	24	55	59	0	28	12	1.34
82547--82604	29	2.0	30	86	3	82	58	0	25	15	1.37
82554--82619	29	2.2	30	78	10	82	60	0	24	15	1.35
85319--85369	14	3.7	14	82	7	52	41	7	9	41	1.67
88054--88432	45	8.4	45	91	0	535	30	20	15	34	1.93

Tables:   1

The End!