Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011657.1 Corchorus capsularis cultivar CVL-1 contig11678, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103110

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
175--202
14
2.0
14
100
0
56
78
0
21
0
0.75
4640--4765
62
2.0
62
100
0
252
50
6
7
35
1.57
24922--24981
29
2.1
29
90
0
93
21
35
23
20
1.96
27244--27341
37
2.7
36
80
10
101
38
28
14
18
1.90
28125--28167
13
3.2
13
81
15
52
60
6
0
32
1.23
29348--29427
6
14.0
6
73
15
62
3
18
0
77
0.92
29367--29432
17
3.8
17
80
20
73
1
18
0
80
0.79
29348--29424
23
3.4
23
81
12
70
3
18
0
77
0.91
39238--39313
37
2.0
38
87
7
111
51
7
10
30
1.65
43335--43450
60
2.0
60
84
5
155
21
7
26
43
1.79
49419--49455
19
2.0
19
89
5
58
35
0
0
64
0.94
49902--50095
103
1.9
102
80
5
230
38
13
10
36
1.80
56316--56344
2
14.5
2
100
0
58
48
0
51
0
1.00
57491--57524
16
2.1
17
94
5
61
29
52
17
0
1.45
58279--58331
23
2.3
23
86
0
70
26
45
22
5
1.74
58320--58376
16
3.6
16
92
2
89
38
42
15
3
1.65
60990--61037
20
2.3
20
82
3
60
16
8
8
66
1.42
73457--74323
337
2.6
330
82
8
977
37
14
13
34
1.86
75425--75489
18
3.5
18
76
12
60
52
1
3
43
1.26
76093--76125
10
3.3
10
87
12
50
54
0
18
27
1.44
80983--81057
23
3.3
23
81
5
100
46
4
5
44
1.45
82733--82967
22
10.7
22
71
11
124
38
15
8
37
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82821--82984
44
3.8
43
73
13
122
39
17
6
36
1.76
82826--82984
66
2.4
65
78
14
173
38
18
6
36
1.78
82738--82984
88
2.8
86
79
8
223
38
16
7
37
1.78
82621--82984
22
16.4
21
67
18
107
37
14
8
39
1.77
82836--83037
88
2.3
88
80
13
220
37
19
7
36
1.80
83307--83425
22
5.3
22
80
15
120
40
16
8
34
1.79
83321--83411
22
4.0
24
88
8
127
42
16
6
34
1.74
83321--83425
46
2.3
44
85
9
142
41
15
8
34
1.77
85168--85433
134
2.0
131
89
2
406
38
10
2
48
1.51
88283--88396
33
3.5
33
100
0
228
42
15
12
29
1.84

Tables:   1

The End!