Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01011661.1 Corchorus capsularis cultivar CVL-1 contig11682, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21413

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
623--666
22
2.0
22
95
0
79
25
0
18
56
1.41
1096--1385
35
8.3
35
87
6
401
39
9
17
33
1.82
1096--1385
141
2.1
140
86
7
401
39
9
17
33
1.82
4316--4403
41
2.1
43
89
6
137
60
10
19
10
1.57
6867--7242
36
10.5
36
72
12
238
18
14
29
37
1.91
6889--7243
72
5.0
70
77
9
283
18
14
29
36
1.91
6936--7135
108
1.9
108
87
2
294
20
12
30
37
1.89
10406--10814
35
11.8
35
85
8
475
38
10
18
33
1.84
10502--10571
31
2.4
27
74
17
68
40
8
17
34
1.80
11637--11701
26
2.5
26
92
0
112
24
20
4
50
1.66
11687--11730
21
2.1
21
82
0
52
29
22
4
43
1.73
11719--11917
7
27.7
7
65
14
57
19
22
4
53
1.61
11693--11945
36
6.9
36
76
9
235
20
22
4
52
1.63
11720--11776
29
1.9
30
85
3
80
19
21
1
57
1.49
11693--11861
73
2.3
72
84
2
205
21
23
3
50
1.64
11844--11905
21
3.0
21
90
0
97
20
19
4
54
1.62
11947--12096
40
3.8
40
92
0
246
24
20
2
53
1.58
12229--12300
32
2.3
31
85
9
92
20
25
6
47
1.75
12293--12479
40
4.5
40
68
19
141
26
19
3
50
1.62
15562--15603
18
2.3
19
87
4
59
57
16
16
9
1.65
19761--19832
25
2.8
26
75
6
76
40
8
13
37
1.75
20785--20819
2
17.5
2
93
0
61
48
2
0
48
1.16

Tables:   1

The End!